Strain Fitness in Xanthobacter sp. DMC5 around GFF972

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF970 and GFF971 are separated by 106 nucleotidesGFF971 and GFF972 are separated by 10 nucleotidesGFF972 and GFF973 overlap by 4 nucleotidesGFF973 and GFF974 are separated by 31 nucleotides GFF970 - Linearmycin resistance permease protein LnrM, at 1,048,690 to 1,049,883 GFF970 GFF971 - Heme exporter protein C, at 1,049,990 to 1,050,721 GFF971 GFF972 - hypothetical protein, at 1,050,732 to 1,050,902 GFF972 GFF973 - Thiol:disulfide interchange protein CycY, at 1,050,899 to 1,051,495 GFF973 GFF974 - putative adenylyltransferase/sulfurtransferase MoeZ, at 1,051,527 to 1,052,345 GFF974 Position (kb) 1050 1051Strain fitness (log2 ratio) -1 0 1at 1049.978 kb on + strandat 1049.978 kb on + strandat 1051.523 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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1,049,978 + +0.5
1,049,978 + -1.1
1,051,523 - -1.0

Or see this region's nucleotide sequence