Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF900 and GFF901 are separated by 60 nucleotides GFF901 and GFF902 are separated by 22 nucleotides GFF902 and GFF903 overlap by 35 nucleotides GFF903 and GFF904 are separated by 4 nucleotides
GFF900 - Urease subunit alpha 1, at 969,180 to 970,892
GFF900
GFF901 - Urease subunit alpha, at 970,953 to 971,573
GFF901
GFF902 - Urease accessory protein UreD, at 971,596 to 972,453
GFF902
GFF903 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 972,419 to 973,114
GFF903
GFF904 - Ribose import ATP-binding protein RbsA, at 973,119 to 973,976
GFF904
Position (kb) 971
972
973 Strain fitness (log2 ratio) -1
0
1
2 at 970.682 kb on + strand, within GFF900 at 970.772 kb on - strand at 970.772 kb on - strand at 970.861 kb on + strand at 970.861 kb on + strand at 970.862 kb on - strand at 970.862 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.987 kb on + strand at 970.988 kb on - strand at 971.140 kb on + strand, within GFF901 at 971.140 kb on + strand, within GFF901 at 971.175 kb on - strand, within GFF901 at 971.752 kb on - strand, within GFF902 at 971.798 kb on + strand, within GFF902 at 971.799 kb on - strand, within GFF902 at 971.799 kb on - strand, within GFF902 at 971.891 kb on + strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 972.149 kb on + strand, within GFF902 at 972.149 kb on + strand, within GFF902 at 972.149 kb on + strand, within GFF902 at 972.150 kb on - strand, within GFF902 at 972.249 kb on + strand, within GFF902 at 972.249 kb on + strand, within GFF902 at 972.541 kb on - strand, within GFF903 at 972.541 kb on - strand, within GFF903 at 972.585 kb on + strand, within GFF903 at 972.586 kb on - strand, within GFF903 at 972.607 kb on - strand, within GFF903 at 972.614 kb on - strand, within GFF903 at 972.614 kb on - strand, within GFF903 at 972.745 kb on - strand, within GFF903 at 972.786 kb on + strand, within GFF903 at 972.786 kb on + strand, within GFF903 at 972.787 kb on - strand, within GFF903 at 972.787 kb on - strand, within GFF903 at 972.814 kb on - strand, within GFF903 at 972.814 kb on - strand, within GFF903 at 973.084 kb on - strand at 973.086 kb on + strand at 973.086 kb on + strand at 973.087 kb on - strand at 973.087 kb on - strand at 973.087 kb on - strand at 973.087 kb on - strand at 973.132 kb on + strand at 973.132 kb on + strand at 973.132 kb on + strand at 973.132 kb on + strand at 973.133 kb on - strand at 973.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 970,682 + GFF900 0.88 -0.8 970,772 - +2.1 970,772 - +1.0 970,861 + -0.8 970,861 + -0.5 970,862 - -0.4 970,862 - -0.2 970,955 - +1.2 970,955 - -0.4 970,955 - +0.8 970,955 - +0.3 970,987 + -0.3 970,988 - -0.5 971,140 + GFF901 0.30 -0.2 971,140 + GFF901 0.30 -0.0 971,175 - GFF901 0.36 -0.2 971,752 - GFF902 0.18 +0.1 971,798 + GFF902 0.24 -0.0 971,799 - GFF902 0.24 -1.1 971,799 - GFF902 0.24 +0.1 971,891 + GFF902 0.34 -0.7 971,892 - GFF902 0.34 +0.1 971,892 - GFF902 0.34 -0.1 971,892 - GFF902 0.34 -0.1 972,149 + GFF902 0.64 -0.3 972,149 + GFF902 0.64 +0.1 972,149 + GFF902 0.64 +0.1 972,150 - GFF902 0.65 -0.7 972,249 + GFF902 0.76 -0.5 972,249 + GFF902 0.76 -0.1 972,541 - GFF903 0.18 -0.7 972,541 - GFF903 0.18 -0.1 972,585 + GFF903 0.24 -0.0 972,586 - GFF903 0.24 +0.0 972,607 - GFF903 0.27 -1.3 972,614 - GFF903 0.28 +0.2 972,614 - GFF903 0.28 +0.3 972,745 - GFF903 0.47 +0.3 972,786 + GFF903 0.53 +0.6 972,786 + GFF903 0.53 +0.2 972,787 - GFF903 0.53 -0.7 972,787 - GFF903 0.53 -0.2 972,814 - GFF903 0.57 +0.6 972,814 - GFF903 0.57 -0.5 973,084 - -0.4 973,086 + +0.4 973,086 + +1.6 973,087 - -0.4 973,087 - +0.9 973,087 - -0.2 973,087 - +0.3 973,132 + -0.0 973,132 + +0.2 973,132 + +0.1 973,132 + -0.2 973,133 - +0.2 973,133 - -0.3
Or see this region's nucleotide sequence