Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF896 and GFF897 are separated by 37 nucleotides GFF897 and GFF898 overlap by 4 nucleotides GFF898 and GFF899 are separated by 505 nucleotides
GFF896 - hypothetical protein, at 965,920 to 966,411
GFF896
GFF897 - Urease accessory protein UreG, at 966,449 to 967,072
GFF897
GFF898 - Urease accessory protein UreF, at 967,069 to 968,046
GFF898
GFF899 - DNA protection during starvation protein 1, at 968,552 to 969,091
GFF899
Position (kb) 967
968
969 Strain fitness (log2 ratio) -1
0
1 at 966.421 kb on - strand at 966.421 kb on - strand at 966.421 kb on - strand at 966.537 kb on + strand, within GFF897 at 966.537 kb on + strand, within GFF897 at 966.538 kb on - strand, within GFF897 at 966.538 kb on - strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.702 kb on + strand, within GFF897 at 966.703 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.940 kb on - strand, within GFF897 at 966.969 kb on + strand, within GFF897 at 966.969 kb on + strand, within GFF897 at 966.970 kb on - strand, within GFF897 at 967.089 kb on + strand at 967.089 kb on + strand at 967.089 kb on + strand at 967.089 kb on + strand at 967.089 kb on + strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.090 kb on - strand at 967.091 kb on + strand at 967.091 kb on + strand at 967.091 kb on + strand at 967.158 kb on + strand at 967.158 kb on + strand at 967.159 kb on - strand at 967.159 kb on - strand at 967.159 kb on - strand at 967.159 kb on - strand at 967.679 kb on + strand, within GFF898 at 967.679 kb on + strand, within GFF898 at 967.679 kb on + strand, within GFF898 at 967.680 kb on - strand, within GFF898 at 967.686 kb on - strand, within GFF898 at 967.686 kb on - strand, within GFF898 at 967.686 kb on - strand, within GFF898 at 968.064 kb on + strand at 968.065 kb on - strand at 968.065 kb on - strand at 968.153 kb on + strand at 968.160 kb on + strand at 968.161 kb on - strand at 968.161 kb on - strand at 968.494 kb on + strand at 968.501 kb on + strand at 968.502 kb on - strand at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.625 kb on + strand, within GFF899 at 968.626 kb on - strand, within GFF899 at 968.626 kb on - strand, within GFF899 at 968.754 kb on + strand, within GFF899 at 968.754 kb on + strand, within GFF899 at 968.755 kb on - strand, within GFF899 at 968.755 kb on - strand, within GFF899 at 968.860 kb on + strand, within GFF899 at 968.860 kb on + strand, within GFF899 at 968.901 kb on + strand, within GFF899 at 968.901 kb on + strand, within GFF899 at 968.955 kb on + strand, within GFF899 at 968.955 kb on + strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 968.956 kb on - strand, within GFF899 at 968.956 kb on - strand, within GFF899
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 966,421 - -0.9 966,421 - +0.3 966,421 - -0.4 966,537 + GFF897 0.14 -0.1 966,537 + GFF897 0.14 +0.2 966,538 - GFF897 0.14 -0.8 966,538 - GFF897 0.14 -0.8 966,702 + GFF897 0.41 -0.3 966,702 + GFF897 0.41 -0.6 966,702 + GFF897 0.41 +0.3 966,702 + GFF897 0.41 +0.6 966,702 + GFF897 0.41 +1.2 966,703 - GFF897 0.41 -1.1 966,940 - GFF897 0.79 +0.2 966,940 - GFF897 0.79 -0.7 966,940 - GFF897 0.79 -0.5 966,940 - GFF897 0.79 -0.0 966,940 - GFF897 0.79 +0.3 966,940 - GFF897 0.79 -0.6 966,940 - GFF897 0.79 +1.3 966,940 - GFF897 0.79 -0.6 966,969 + GFF897 0.83 -0.5 966,969 + GFF897 0.83 -0.7 966,970 - GFF897 0.83 -1.1 967,089 + +0.2 967,089 + -0.3 967,089 + -0.6 967,089 + -0.2 967,089 + -0.6 967,090 - -0.3 967,090 - -0.8 967,090 - -0.4 967,090 - +0.2 967,090 - -0.8 967,090 - +0.7 967,091 + +0.9 967,091 + -0.5 967,091 + -0.7 967,158 + -0.8 967,158 + -0.2 967,159 - +0.8 967,159 - -0.2 967,159 - +0.1 967,159 - -0.3 967,679 + GFF898 0.62 -0.4 967,679 + GFF898 0.62 +1.0 967,679 + GFF898 0.62 -0.6 967,680 - GFF898 0.62 -0.4 967,686 - GFF898 0.63 -0.3 967,686 - GFF898 0.63 -1.6 967,686 - GFF898 0.63 +0.2 968,064 + +0.4 968,065 - +0.3 968,065 - +0.4 968,153 + -0.6 968,160 + -0.3 968,161 - -0.0 968,161 - +1.6 968,494 + +0.6 968,501 + -0.2 968,502 - -0.6 968,625 + GFF899 0.14 -0.4 968,625 + GFF899 0.14 -0.0 968,625 + GFF899 0.14 -0.0 968,625 + GFF899 0.14 -0.7 968,626 - GFF899 0.14 -0.6 968,626 - GFF899 0.14 +1.6 968,754 + GFF899 0.37 +0.8 968,754 + GFF899 0.37 +0.6 968,755 - GFF899 0.38 -0.3 968,755 - GFF899 0.38 +1.0 968,860 + GFF899 0.57 -1.2 968,860 + GFF899 0.57 +0.1 968,901 + GFF899 0.65 +0.3 968,901 + GFF899 0.65 -0.5 968,955 + GFF899 0.75 +0.2 968,955 + GFF899 0.75 -0.6 968,956 - GFF899 0.75 -0.2 968,956 - GFF899 0.75 +0.3 968,956 - GFF899 0.75 -0.6
Or see this region's nucleotide sequence