Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF880 and GFF881 are separated by 508 nucleotides GFF881 and GFF882 are separated by 212 nucleotides
GFF880 - hypothetical protein, at 952,818 to 953,705
GFF880
GFF881 - hypothetical protein, at 954,214 to 954,360
GFF881
GFF882 - hypothetical protein, at 954,573 to 954,857
GFF882
Position (kb) 952
953
954 Strain fitness (log2 ratio) -1
0
1 at 951.818 kb on + strand at 951.819 kb on - strand at 951.857 kb on + strand at 951.858 kb on - strand at 951.876 kb on + strand at 951.882 kb on + strand at 951.919 kb on - strand at 951.919 kb on - strand at 951.961 kb on - strand at 951.961 kb on - strand at 952.056 kb on - strand at 952.057 kb on + strand at 952.075 kb on - strand at 952.305 kb on + strand at 952.318 kb on + strand at 952.318 kb on + strand at 952.371 kb on + strand at 952.372 kb on - strand at 952.390 kb on + strand at 952.391 kb on - strand at 952.476 kb on + strand at 952.477 kb on - strand at 952.514 kb on + strand at 952.514 kb on + strand at 952.514 kb on + strand at 952.514 kb on + strand at 952.514 kb on + strand at 952.514 kb on + strand at 952.514 kb on + strand at 952.515 kb on - strand at 952.515 kb on - strand at 952.515 kb on - strand at 952.522 kb on - strand at 952.558 kb on + strand at 952.558 kb on + strand at 952.559 kb on - strand at 952.593 kb on + strand at 952.633 kb on + strand at 952.633 kb on + strand at 952.745 kb on - strand at 952.801 kb on + strand at 952.868 kb on + strand at 952.868 kb on + strand at 952.869 kb on - strand at 952.935 kb on - strand, within GFF880 at 952.993 kb on + strand, within GFF880 at 952.993 kb on + strand, within GFF880 at 952.993 kb on + strand, within GFF880 at 952.993 kb on + strand, within GFF880 at 952.993 kb on + strand, within GFF880 at 952.994 kb on - strand, within GFF880 at 952.994 kb on - strand, within GFF880 at 952.994 kb on - strand, within GFF880 at 952.998 kb on + strand, within GFF880 at 952.998 kb on + strand, within GFF880 at 952.998 kb on + strand, within GFF880 at 952.998 kb on + strand, within GFF880 at 952.999 kb on - strand, within GFF880 at 952.999 kb on - strand, within GFF880 at 952.999 kb on - strand, within GFF880 at 953.016 kb on + strand, within GFF880 at 953.016 kb on + strand, within GFF880 at 953.016 kb on + strand, within GFF880 at 953.016 kb on + strand, within GFF880 at 953.159 kb on - strand, within GFF880 at 953.159 kb on - strand, within GFF880 at 953.186 kb on + strand, within GFF880 at 953.258 kb on - strand, within GFF880 at 953.527 kb on + strand, within GFF880 at 953.527 kb on + strand, within GFF880 at 953.528 kb on - strand, within GFF880 at 953.528 kb on - strand, within GFF880 at 953.528 kb on - strand, within GFF880 at 953.610 kb on - strand, within GFF880 at 953.610 kb on - strand, within GFF880 at 953.668 kb on - strand at 953.668 kb on - strand at 953.668 kb on - strand at 953.668 kb on - strand at 953.714 kb on + strand at 953.714 kb on + strand at 953.714 kb on + strand at 953.743 kb on - strand at 953.745 kb on - strand at 953.794 kb on + strand at 954.081 kb on + strand at 954.287 kb on + strand, within GFF881 at 954.288 kb on - strand, within GFF881 at 954.297 kb on - strand, within GFF881 at 954.341 kb on + strand, within GFF881 at 954.341 kb on + strand, within GFF881 at 954.445 kb on - strand at 954.445 kb on - strand at 954.445 kb on - strand at 954.512 kb on + strand at 954.585 kb on - strand at 954.660 kb on + strand, within GFF882 at 954.660 kb on + strand, within GFF882 at 954.660 kb on + strand, within GFF882 at 954.661 kb on - strand, within GFF882 at 954.661 kb on - strand, within GFF882 at 954.661 kb on - strand, within GFF882
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 951,818 + +0.5 951,819 - +1.1 951,857 + +0.7 951,858 - +0.1 951,876 + +0.3 951,882 + -0.9 951,919 - -0.4 951,919 - +0.0 951,961 - +0.6 951,961 - +0.6 952,056 - -0.1 952,057 + +0.0 952,075 - -0.5 952,305 + -1.0 952,318 + -0.9 952,318 + +0.3 952,371 + -0.9 952,372 - -0.5 952,390 + -0.2 952,391 - +0.1 952,476 + -0.0 952,477 - -0.6 952,514 + +0.2 952,514 + +0.4 952,514 + -0.4 952,514 + +0.3 952,514 + -0.6 952,514 + -1.7 952,514 + -0.3 952,515 - -0.6 952,515 - +0.1 952,515 - -1.0 952,522 - +0.7 952,558 + -0.1 952,558 + +0.3 952,559 - -0.7 952,593 + -0.2 952,633 + +0.3 952,633 + -0.6 952,745 - +0.0 952,801 + -1.0 952,868 + +0.5 952,868 + -0.6 952,869 - -0.3 952,935 - GFF880 0.13 -0.1 952,993 + GFF880 0.20 +0.8 952,993 + GFF880 0.20 -0.1 952,993 + GFF880 0.20 -0.3 952,993 + GFF880 0.20 -0.3 952,993 + GFF880 0.20 +0.0 952,994 - GFF880 0.20 +0.7 952,994 - GFF880 0.20 -0.1 952,994 - GFF880 0.20 +0.5 952,998 + GFF880 0.20 -0.1 952,998 + GFF880 0.20 -0.1 952,998 + GFF880 0.20 +0.3 952,998 + GFF880 0.20 -0.9 952,999 - GFF880 0.20 +0.8 952,999 - GFF880 0.20 +0.3 952,999 - GFF880 0.20 +0.4 953,016 + GFF880 0.22 +0.6 953,016 + GFF880 0.22 -0.0 953,016 + GFF880 0.22 -0.0 953,016 + GFF880 0.22 +0.1 953,159 - GFF880 0.38 -0.0 953,159 - GFF880 0.38 -0.4 953,186 + GFF880 0.41 +0.3 953,258 - GFF880 0.50 -0.6 953,527 + GFF880 0.80 -1.0 953,527 + GFF880 0.80 -0.7 953,528 - GFF880 0.80 +0.3 953,528 - GFF880 0.80 +0.2 953,528 - GFF880 0.80 +0.3 953,610 - GFF880 0.89 -0.3 953,610 - GFF880 0.89 -1.0 953,668 - +0.1 953,668 - -0.0 953,668 - +0.3 953,668 - +0.5 953,714 + -0.7 953,714 + +1.6 953,714 + -0.7 953,743 - -0.6 953,745 - -0.1 953,794 + -0.4 954,081 + +0.7 954,287 + GFF881 0.50 +0.9 954,288 - GFF881 0.50 +0.4 954,297 - GFF881 0.56 +0.2 954,341 + GFF881 0.86 -0.3 954,341 + GFF881 0.86 -0.2 954,445 - +0.1 954,445 - -0.7 954,445 - -0.2 954,512 + -0.3 954,585 - -0.6 954,660 + GFF882 0.31 -0.3 954,660 + GFF882 0.31 -0.6 954,660 + GFF882 0.31 -0.3 954,661 - GFF882 0.31 -0.2 954,661 - GFF882 0.31 +0.5 954,661 - GFF882 0.31 -0.0
Or see this region's nucleotide sequence