Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF758 and GFF759 are separated by 13 nucleotides GFF759 and GFF760 overlap by 4 nucleotides GFF760 and GFF761 overlap by 1 nucleotides GFF761 and GFF762 overlap by 4 nucleotides
GFF758 - hypothetical protein, at 810,621 to 811,145
GFF758
GFF759 - hypothetical protein, at 811,159 to 812,058
GFF759
GFF760 - High-affinity branched-chain amino acid transport system permease protein LivH, at 812,055 to 812,915
GFF760
GFF761 - Lipopolysaccharide export system ATP-binding protein LptB, at 812,915 to 813,634
GFF761
GFF762 - Lipopolysaccharide export system ATP-binding protein LptB, at 813,631 to 814,407
GFF762
Position (kb) 812
813 Strain fitness (log2 ratio) -1
0
1
2 at 811.069 kb on + strand, within GFF758 at 811.184 kb on + strand at 811.212 kb on - strand at 811.360 kb on - strand, within GFF759 at 811.407 kb on + strand, within GFF759 at 811.438 kb on - strand, within GFF759 at 811.439 kb on + strand, within GFF759 at 811.440 kb on - strand, within GFF759 at 811.440 kb on - strand, within GFF759 at 811.440 kb on - strand, within GFF759 at 811.446 kb on - strand, within GFF759 at 811.446 kb on - strand, within GFF759 at 811.448 kb on + strand, within GFF759 at 811.448 kb on + strand, within GFF759 at 811.449 kb on - strand, within GFF759 at 811.449 kb on - strand, within GFF759 at 811.640 kb on + strand, within GFF759 at 811.802 kb on + strand, within GFF759 at 811.803 kb on - strand, within GFF759 at 811.803 kb on - strand, within GFF759 at 811.803 kb on - strand, within GFF759 at 811.925 kb on + strand, within GFF759 at 811.926 kb on - strand, within GFF759 at 811.940 kb on + strand, within GFF759 at 811.941 kb on - strand, within GFF759 at 811.941 kb on - strand, within GFF759 at 811.941 kb on - strand, within GFF759 at 811.941 kb on - strand, within GFF759 at 811.941 kb on - strand, within GFF759 at 811.941 kb on - strand, within GFF759 at 812.011 kb on - strand at 812.013 kb on + strand at 812.014 kb on - strand at 812.014 kb on - strand at 812.031 kb on + strand at 812.048 kb on + strand at 812.049 kb on - strand at 812.049 kb on - strand at 812.157 kb on + strand, within GFF760 at 812.157 kb on + strand, within GFF760 at 812.158 kb on - strand, within GFF760 at 812.158 kb on - strand, within GFF760 at 812.158 kb on - strand, within GFF760 at 812.158 kb on - strand, within GFF760 at 812.266 kb on + strand, within GFF760 at 812.296 kb on - strand, within GFF760 at 812.356 kb on - strand, within GFF760 at 812.674 kb on + strand, within GFF760 at 812.773 kb on + strand, within GFF760 at 812.774 kb on - strand, within GFF760 at 812.774 kb on - strand, within GFF760 at 812.774 kb on - strand, within GFF760 at 812.782 kb on + strand, within GFF760 at 812.783 kb on - strand, within GFF760 at 812.783 kb on - strand, within GFF760 at 812.783 kb on - strand, within GFF760 at 812.815 kb on + strand, within GFF760 at 812.815 kb on + strand, within GFF760 at 812.815 kb on + strand, within GFF760 at 812.815 kb on + strand, within GFF760 at 812.815 kb on + strand, within GFF760 at 812.816 kb on - strand, within GFF760 at 812.931 kb on + strand at 812.932 kb on - strand at 812.932 kb on - strand at 812.932 kb on - strand at 813.317 kb on + strand, within GFF761 at 813.317 kb on + strand, within GFF761 at 813.318 kb on - strand, within GFF761 at 813.838 kb on + strand, within GFF762 at 813.874 kb on + strand, within GFF762 at 813.875 kb on - strand, within GFF762
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 811,069 + GFF758 0.85 -0.2 811,184 + +0.7 811,212 - -0.0 811,360 - GFF759 0.22 -0.1 811,407 + GFF759 0.28 +1.0 811,438 - GFF759 0.31 +0.4 811,439 + GFF759 0.31 -0.2 811,440 - GFF759 0.31 -1.2 811,440 - GFF759 0.31 -0.3 811,440 - GFF759 0.31 -0.3 811,446 - GFF759 0.32 +0.6 811,446 - GFF759 0.32 -0.3 811,448 + GFF759 0.32 -0.0 811,448 + GFF759 0.32 +0.2 811,449 - GFF759 0.32 -0.7 811,449 - GFF759 0.32 -1.0 811,640 + GFF759 0.53 -0.0 811,802 + GFF759 0.71 +0.3 811,803 - GFF759 0.72 +0.1 811,803 - GFF759 0.72 +0.7 811,803 - GFF759 0.72 +0.4 811,925 + GFF759 0.85 +0.9 811,926 - GFF759 0.85 -0.1 811,940 + GFF759 0.87 +0.3 811,941 - GFF759 0.87 +0.5 811,941 - GFF759 0.87 -0.4 811,941 - GFF759 0.87 -0.1 811,941 - GFF759 0.87 +0.3 811,941 - GFF759 0.87 -1.1 811,941 - GFF759 0.87 +0.3 812,011 - -0.1 812,013 + -0.3 812,014 - -0.6 812,014 - +1.8 812,031 + -0.4 812,048 + -0.0 812,049 - -0.4 812,049 - +0.1 812,157 + GFF760 0.12 +0.6 812,157 + GFF760 0.12 +0.3 812,158 - GFF760 0.12 -0.4 812,158 - GFF760 0.12 +0.2 812,158 - GFF760 0.12 +1.0 812,158 - GFF760 0.12 -0.9 812,266 + GFF760 0.25 +0.8 812,296 - GFF760 0.28 +0.3 812,356 - GFF760 0.35 -0.5 812,674 + GFF760 0.72 -0.0 812,773 + GFF760 0.83 +0.1 812,774 - GFF760 0.84 -0.3 812,774 - GFF760 0.84 +0.2 812,774 - GFF760 0.84 -0.4 812,782 + GFF760 0.84 -0.4 812,783 - GFF760 0.85 +0.4 812,783 - GFF760 0.85 -0.7 812,783 - GFF760 0.85 +0.1 812,815 + GFF760 0.88 +0.3 812,815 + GFF760 0.88 +0.5 812,815 + GFF760 0.88 +0.2 812,815 + GFF760 0.88 +0.7 812,815 + GFF760 0.88 +0.6 812,816 - GFF760 0.88 -1.0 812,931 + -0.3 812,932 - +0.4 812,932 - +0.2 812,932 - +0.1 813,317 + GFF761 0.56 +0.1 813,317 + GFF761 0.56 -1.3 813,318 - GFF761 0.56 +0.4 813,838 + GFF762 0.27 -0.6 813,874 + GFF762 0.31 +0.1 813,875 - GFF762 0.31 +0.3
Or see this region's nucleotide sequence