Strain Fitness in Xanthobacter sp. DMC5 around GFF719

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF718 and GFF719 are separated by 10 nucleotidesGFF719 and GFF720 are separated by 5 nucleotides GFF718 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 766,226 to 767,236 GFF718 GFF719 - hypothetical protein, at 767,247 to 767,603 GFF719 GFF720 - 1-deoxy-D-xylulose-5-phosphate synthase, at 767,609 to 769,000 GFF720 Position (kb) 767 768Strain fitness (log2 ratio) -1 0 1at 766.507 kb on + strand, within GFF718at 766.668 kb on - strand, within GFF718at 766.778 kb on + strand, within GFF718at 766.800 kb on - strand, within GFF718at 766.986 kb on - strand, within GFF718at 767.266 kb on + strandat 767.382 kb on + strand, within GFF719at 768.263 kb on - strand, within GFF720at 768.326 kb on + strand, within GFF720at 768.417 kb on - strand, within GFF720at 768.549 kb on - strand, within GFF720

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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766,507 + GFF718 0.28 -0.0
766,668 - GFF718 0.44 -0.2
766,778 + GFF718 0.55 -0.5
766,800 - GFF718 0.57 -1.0
766,986 - GFF718 0.75 -1.4
767,266 + -0.5
767,382 + GFF719 0.38 -0.7
768,263 - GFF720 0.47 -0.6
768,326 + GFF720 0.52 -1.2
768,417 - GFF720 0.58 -0.0
768,549 - GFF720 0.68 -0.6

Or see this region's nucleotide sequence