Strain Fitness in Xanthobacter sp. DMC5 around GFF718

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF716 and GFF717 are separated by 124 nucleotidesGFF717 and GFF718 are separated by 161 nucleotidesGFF718 and GFF719 are separated by 10 nucleotidesGFF719 and GFF720 are separated by 5 nucleotides GFF716 - DNA repair protein RecO, at 764,891 to 765,625 GFF716 GFF717 - hypothetical protein, at 765,750 to 766,064 GFF717 GFF718 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 766,226 to 767,236 GFF718 GFF719 - hypothetical protein, at 767,247 to 767,603 GFF719 GFF720 - 1-deoxy-D-xylulose-5-phosphate synthase, at 767,609 to 769,000 GFF720 Position (kb) 766 767 768Strain fitness (log2 ratio) -1 0 1at 765.420 kb on + strand, within GFF716at 766.072 kb on + strandat 766.507 kb on + strand, within GFF718at 766.668 kb on - strand, within GFF718at 766.778 kb on + strand, within GFF718at 766.800 kb on - strand, within GFF718at 766.986 kb on - strand, within GFF718at 767.266 kb on + strandat 767.382 kb on + strand, within GFF719

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
765,420 + GFF716 0.72 -0.3
766,072 + -0.1
766,507 + GFF718 0.28 -0.0
766,668 - GFF718 0.44 -0.2
766,778 + GFF718 0.55 -0.5
766,800 - GFF718 0.57 -1.0
766,986 - GFF718 0.75 -1.4
767,266 + -0.5
767,382 + GFF719 0.38 -0.7

Or see this region's nucleotide sequence