Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF668 and GFF669 are separated by 153 nucleotides GFF669 and GFF670 overlap by 4 nucleotides GFF670 and GFF671 are separated by 107 nucleotides
GFF668 - Hydrogen peroxide-inducible genes activator, at 719,008 to 719,916
GFF668
GFF669 - Adaptive-response sensory-kinase SasA, at 720,070 to 721,647
GFF669
GFF670 - Response regulator protein TmoT, at 721,644 to 722,264
GFF670
GFF671 - hypothetical protein, at 722,372 to 722,866
GFF671
Position (kb) 720
721
722 Strain fitness (log2 ratio) -1
0
1 at 719.217 kb on + strand, within GFF668 at 719.217 kb on + strand, within GFF668 at 719.317 kb on + strand, within GFF668 at 719.318 kb on - strand, within GFF668 at 719.486 kb on + strand, within GFF668 at 719.486 kb on + strand, within GFF668 at 719.871 kb on + strand at 719.872 kb on - strand at 720.014 kb on + strand at 720.081 kb on + strand at 720.081 kb on + strand at 720.082 kb on - strand at 720.341 kb on - strand, within GFF669 at 720.344 kb on - strand, within GFF669 at 720.344 kb on - strand, within GFF669 at 720.344 kb on - strand, within GFF669 at 720.363 kb on - strand, within GFF669 at 720.490 kb on + strand, within GFF669 at 720.493 kb on + strand, within GFF669 at 720.493 kb on + strand, within GFF669 at 720.521 kb on - strand, within GFF669 at 720.521 kb on - strand, within GFF669 at 720.769 kb on + strand, within GFF669 at 720.769 kb on + strand, within GFF669 at 720.770 kb on - strand, within GFF669 at 720.770 kb on - strand, within GFF669 at 720.842 kb on - strand, within GFF669 at 721.147 kb on + strand, within GFF669 at 721.148 kb on - strand, within GFF669 at 721.148 kb on - strand, within GFF669 at 721.398 kb on - strand, within GFF669 at 721.662 kb on + strand at 721.663 kb on - strand at 721.663 kb on - strand at 722.236 kb on + strand at 722.236 kb on + strand at 722.240 kb on + strand at 722.241 kb on - strand at 722.241 kb on - strand at 722.241 kb on - strand at 722.241 kb on - strand at 722.247 kb on - strand at 722.247 kb on - strand at 722.297 kb on + strand at 722.298 kb on - strand at 722.525 kb on + strand, within GFF671 at 722.525 kb on + strand, within GFF671 at 722.526 kb on - strand, within GFF671 at 722.526 kb on - strand, within GFF671 at 722.526 kb on - strand, within GFF671 at 722.526 kb on - strand, within GFF671
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 719,217 + GFF668 0.23 -0.7 719,217 + GFF668 0.23 -0.3 719,317 + GFF668 0.34 -0.7 719,318 - GFF668 0.34 +1.0 719,486 + GFF668 0.53 +0.0 719,486 + GFF668 0.53 -0.5 719,871 + -0.4 719,872 - -0.7 720,014 + -0.1 720,081 + +0.4 720,081 + -1.5 720,082 - -0.1 720,341 - GFF669 0.17 -0.3 720,344 - GFF669 0.17 -0.3 720,344 - GFF669 0.17 +0.4 720,344 - GFF669 0.17 -0.1 720,363 - GFF669 0.19 +0.9 720,490 + GFF669 0.27 -0.8 720,493 + GFF669 0.27 -0.2 720,493 + GFF669 0.27 +0.7 720,521 - GFF669 0.29 -0.7 720,521 - GFF669 0.29 -0.6 720,769 + GFF669 0.44 +0.2 720,769 + GFF669 0.44 -1.7 720,770 - GFF669 0.44 -0.8 720,770 - GFF669 0.44 -0.5 720,842 - GFF669 0.49 -0.4 721,147 + GFF669 0.68 -0.1 721,148 - GFF669 0.68 +0.3 721,148 - GFF669 0.68 +0.7 721,398 - GFF669 0.84 +0.6 721,662 + -1.5 721,663 - +0.3 721,663 - -0.7 722,236 + -0.0 722,236 + +0.2 722,240 + -1.3 722,241 - +0.0 722,241 - -0.0 722,241 - -0.4 722,241 - +1.0 722,247 - -0.6 722,247 - -0.2 722,297 + -0.4 722,298 - -0.3 722,525 + GFF671 0.31 +0.4 722,525 + GFF671 0.31 +0.2 722,526 - GFF671 0.31 -0.0 722,526 - GFF671 0.31 +0.0 722,526 - GFF671 0.31 -0.7 722,526 - GFF671 0.31 -0.7
Or see this region's nucleotide sequence