Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF662 and GFF663 overlap by 1 nucleotides GFF663 and GFF664 overlap by 4 nucleotides GFF664 and GFF665 are separated by 3 nucleotides
GFF662 - hypothetical protein, at 712,432 to 714,321
GFF662
GFF663 - Lipopolysaccharide export system ATP-binding protein LptB, at 714,321 to 715,103
GFF663
GFF664 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 715,100 to 715,804
GFF664
GFF665 - hypothetical protein, at 715,808 to 716,347
GFF665
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1 at 713.422 kb on + strand, within GFF662 at 713.422 kb on + strand, within GFF662 at 713.422 kb on + strand, within GFF662 at 713.422 kb on + strand, within GFF662 at 713.422 kb on + strand, within GFF662 at 713.422 kb on + strand, within GFF662 at 713.423 kb on - strand, within GFF662 at 713.423 kb on - strand, within GFF662 at 713.423 kb on - strand, within GFF662 at 713.423 kb on - strand, within GFF662 at 713.425 kb on - strand, within GFF662 at 713.455 kb on + strand, within GFF662 at 713.455 kb on + strand, within GFF662 at 713.455 kb on + strand, within GFF662 at 713.456 kb on - strand, within GFF662 at 713.456 kb on - strand, within GFF662 at 713.456 kb on - strand, within GFF662 at 713.456 kb on - strand, within GFF662 at 713.528 kb on - strand, within GFF662 at 713.570 kb on - strand, within GFF662 at 713.570 kb on - strand, within GFF662 at 713.671 kb on + strand, within GFF662 at 714.034 kb on + strand, within GFF662 at 714.035 kb on - strand, within GFF662 at 714.035 kb on - strand, within GFF662 at 714.763 kb on - strand, within GFF663 at 715.047 kb on + strand at 715.047 kb on + strand at 715.047 kb on + strand at 715.047 kb on + strand at 715.048 kb on - strand at 715.048 kb on - strand at 715.048 kb on - strand at 715.068 kb on + strand at 715.068 kb on + strand at 715.133 kb on + strand at 715.155 kb on - strand at 715.313 kb on + strand, within GFF664 at 715.314 kb on - strand, within GFF664 at 715.340 kb on + strand, within GFF664 at 715.340 kb on + strand, within GFF664 at 715.341 kb on - strand, within GFF664 at 715.451 kb on + strand, within GFF664 at 715.452 kb on - strand, within GFF664 at 715.452 kb on - strand, within GFF664 at 715.713 kb on - strand, within GFF664 at 715.790 kb on + strand at 715.791 kb on - strand at 715.791 kb on - strand at 715.936 kb on + strand, within GFF665 at 715.936 kb on + strand, within GFF665 at 715.937 kb on - strand, within GFF665 at 715.937 kb on - strand, within GFF665 at 715.943 kb on + strand, within GFF665 at 715.943 kb on + strand, within GFF665 at 715.944 kb on - strand, within GFF665
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 713,422 + GFF662 0.52 -0.2 713,422 + GFF662 0.52 +0.0 713,422 + GFF662 0.52 +0.1 713,422 + GFF662 0.52 -1.0 713,422 + GFF662 0.52 +0.1 713,422 + GFF662 0.52 +1.0 713,423 - GFF662 0.52 +0.7 713,423 - GFF662 0.52 +0.1 713,423 - GFF662 0.52 -0.2 713,423 - GFF662 0.52 +0.6 713,425 - GFF662 0.53 -1.1 713,455 + GFF662 0.54 +0.5 713,455 + GFF662 0.54 -1.7 713,455 + GFF662 0.54 -0.3 713,456 - GFF662 0.54 -0.2 713,456 - GFF662 0.54 -0.4 713,456 - GFF662 0.54 -0.9 713,456 - GFF662 0.54 -0.3 713,528 - GFF662 0.58 -0.0 713,570 - GFF662 0.60 +0.5 713,570 - GFF662 0.60 -0.3 713,671 + GFF662 0.66 -0.4 714,034 + GFF662 0.85 -0.5 714,035 - GFF662 0.85 +0.3 714,035 - GFF662 0.85 -0.1 714,763 - GFF663 0.56 -1.0 715,047 + +0.7 715,047 + -0.8 715,047 + +0.1 715,047 + +0.1 715,048 - -0.0 715,048 - -1.9 715,048 - +0.0 715,068 + +0.9 715,068 + +1.2 715,133 + -0.3 715,155 - -1.1 715,313 + GFF664 0.30 -0.1 715,314 - GFF664 0.30 -0.4 715,340 + GFF664 0.34 -0.6 715,340 + GFF664 0.34 -0.4 715,341 - GFF664 0.34 -0.2 715,451 + GFF664 0.50 +0.3 715,452 - GFF664 0.50 -0.5 715,452 - GFF664 0.50 -0.4 715,713 - GFF664 0.87 +0.5 715,790 + +0.2 715,791 - -1.0 715,791 - +0.1 715,936 + GFF665 0.24 +0.1 715,936 + GFF665 0.24 +0.2 715,937 - GFF665 0.24 -0.9 715,937 - GFF665 0.24 -0.4 715,943 + GFF665 0.25 -0.0 715,943 + GFF665 0.25 -0.8 715,944 - GFF665 0.25 -0.2
Or see this region's nucleotide sequence