Strain Fitness in Xanthobacter sp. DMC5 around GFF662

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF661 and GFF662 are separated by 271 nucleotidesGFF662 and GFF663 overlap by 1 nucleotidesGFF663 and GFF664 overlap by 4 nucleotides GFF661 - hypothetical protein, at 710,964 to 712,160 GFF661 GFF662 - hypothetical protein, at 712,432 to 714,321 GFF662 GFF663 - Lipopolysaccharide export system ATP-binding protein LptB, at 714,321 to 715,103 GFF663 GFF664 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 715,100 to 715,804 GFF664 Position (kb) 712 713 714 715Strain fitness (log2 ratio) -2 -1 0 1 2at 711.474 kb on + strand, within GFF661at 711.474 kb on + strand, within GFF661at 711.474 kb on + strand, within GFF661at 711.475 kb on - strand, within GFF661at 711.680 kb on + strand, within GFF661at 711.681 kb on - strand, within GFF661at 711.689 kb on + strand, within GFF661at 711.717 kb on + strand, within GFF661at 711.717 kb on + strand, within GFF661at 711.717 kb on + strand, within GFF661at 711.718 kb on - strand, within GFF661at 711.799 kb on - strand, within GFF661at 711.841 kb on - strand, within GFF661at 711.861 kb on + strand, within GFF661at 711.862 kb on - strand, within GFF661at 711.936 kb on + strand, within GFF661at 711.936 kb on + strand, within GFF661at 711.936 kb on + strand, within GFF661at 712.005 kb on + strand, within GFF661at 712.006 kb on - strand, within GFF661at 712.041 kb on + strandat 712.041 kb on + strandat 712.042 kb on - strandat 712.042 kb on - strandat 712.042 kb on - strandat 712.042 kb on - strandat 712.043 kb on + strandat 712.113 kb on + strandat 712.114 kb on - strandat 712.342 kb on + strandat 712.357 kb on - strandat 712.440 kb on + strandat 712.443 kb on + strandat 712.558 kb on + strandat 712.558 kb on + strandat 712.558 kb on + strandat 712.558 kb on + strandat 712.559 kb on - strandat 712.573 kb on + strandat 712.573 kb on + strandat 712.582 kb on + strandat 712.582 kb on + strandat 712.699 kb on + strand, within GFF662at 712.700 kb on - strand, within GFF662at 712.700 kb on - strand, within GFF662at 712.700 kb on - strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.859 kb on - strand, within GFF662at 712.859 kb on - strand, within GFF662at 712.859 kb on - strand, within GFF662at 713.243 kb on + strand, within GFF662at 713.422 kb on + strand, within GFF662at 713.422 kb on + strand, within GFF662at 713.422 kb on + strand, within GFF662at 713.422 kb on + strand, within GFF662at 713.422 kb on + strand, within GFF662at 713.422 kb on + strand, within GFF662at 713.423 kb on - strand, within GFF662at 713.423 kb on - strand, within GFF662at 713.423 kb on - strand, within GFF662at 713.423 kb on - strand, within GFF662at 713.425 kb on - strand, within GFF662at 713.455 kb on + strand, within GFF662at 713.455 kb on + strand, within GFF662at 713.455 kb on + strand, within GFF662at 713.456 kb on - strand, within GFF662at 713.456 kb on - strand, within GFF662at 713.456 kb on - strand, within GFF662at 713.456 kb on - strand, within GFF662at 713.528 kb on - strand, within GFF662at 713.570 kb on - strand, within GFF662at 713.570 kb on - strand, within GFF662at 713.671 kb on + strand, within GFF662at 714.034 kb on + strand, within GFF662at 714.035 kb on - strand, within GFF662at 714.035 kb on - strand, within GFF662at 714.763 kb on - strand, within GFF663at 715.047 kb on + strandat 715.047 kb on + strandat 715.047 kb on + strandat 715.047 kb on + strandat 715.048 kb on - strandat 715.048 kb on - strandat 715.048 kb on - strandat 715.068 kb on + strandat 715.068 kb on + strandat 715.133 kb on + strandat 715.155 kb on - strandat 715.313 kb on + strand, within GFF664at 715.314 kb on - strand, within GFF664

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
711,474 + GFF661 0.43 -0.6
711,474 + GFF661 0.43 +0.6
711,474 + GFF661 0.43 +0.2
711,475 - GFF661 0.43 -0.3
711,680 + GFF661 0.60 +0.7
711,681 - GFF661 0.60 -0.9
711,689 + GFF661 0.61 +1.0
711,717 + GFF661 0.63 -1.1
711,717 + GFF661 0.63 -1.0
711,717 + GFF661 0.63 +0.8
711,718 - GFF661 0.63 -0.3
711,799 - GFF661 0.70 -0.5
711,841 - GFF661 0.73 +0.0
711,861 + GFF661 0.75 +0.1
711,862 - GFF661 0.75 +1.5
711,936 + GFF661 0.81 +0.5
711,936 + GFF661 0.81 +0.2
711,936 + GFF661 0.81 +0.8
712,005 + GFF661 0.87 +1.8
712,006 - GFF661 0.87 +1.4
712,041 + +0.6
712,041 + +0.4
712,042 - +1.0
712,042 - -0.3
712,042 - +0.7
712,042 - -0.2
712,043 + -0.5
712,113 + +0.3
712,114 - -1.0
712,342 + -0.8
712,357 - +0.6
712,440 + +0.1
712,443 + -0.4
712,558 + +0.2
712,558 + -0.3
712,558 + +0.5
712,558 + -0.6
712,559 - -1.2
712,573 + -1.1
712,573 + +0.0
712,582 + +0.4
712,582 + +0.1
712,699 + GFF662 0.14 +0.2
712,700 - GFF662 0.14 -1.1
712,700 - GFF662 0.14 +1.6
712,700 - GFF662 0.14 +0.0
712,858 + GFF662 0.23 -0.0
712,858 + GFF662 0.23 +0.1
712,858 + GFF662 0.23 +1.1
712,858 + GFF662 0.23 +0.9
712,858 + GFF662 0.23 +0.3
712,859 - GFF662 0.23 -0.4
712,859 - GFF662 0.23 -0.4
712,859 - GFF662 0.23 -0.3
713,243 + GFF662 0.43 -0.1
713,422 + GFF662 0.52 -0.2
713,422 + GFF662 0.52 +0.0
713,422 + GFF662 0.52 +0.1
713,422 + GFF662 0.52 -1.0
713,422 + GFF662 0.52 +0.1
713,422 + GFF662 0.52 +1.0
713,423 - GFF662 0.52 +0.7
713,423 - GFF662 0.52 +0.1
713,423 - GFF662 0.52 -0.2
713,423 - GFF662 0.52 +0.6
713,425 - GFF662 0.53 -1.1
713,455 + GFF662 0.54 +0.5
713,455 + GFF662 0.54 -1.7
713,455 + GFF662 0.54 -0.3
713,456 - GFF662 0.54 -0.2
713,456 - GFF662 0.54 -0.4
713,456 - GFF662 0.54 -0.9
713,456 - GFF662 0.54 -0.3
713,528 - GFF662 0.58 -0.0
713,570 - GFF662 0.60 +0.5
713,570 - GFF662 0.60 -0.3
713,671 + GFF662 0.66 -0.4
714,034 + GFF662 0.85 -0.5
714,035 - GFF662 0.85 +0.3
714,035 - GFF662 0.85 -0.1
714,763 - GFF663 0.56 -1.0
715,047 + +0.7
715,047 + -0.8
715,047 + +0.1
715,047 + +0.1
715,048 - -0.0
715,048 - -1.9
715,048 - +0.0
715,068 + +0.9
715,068 + +1.2
715,133 + -0.3
715,155 - -1.1
715,313 + GFF664 0.30 -0.1
715,314 - GFF664 0.30 -0.4

Or see this region's nucleotide sequence