Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF568 and GFF569 are separated by 398 nucleotides GFF569 and GFF570 are separated by 107 nucleotides GFF570 and GFF571 are separated by 572 nucleotides
GFF568 - hypothetical protein, at 608,409 to 608,687
GFF568
GFF569 - 10 kDa chaperonin 1, at 609,086 to 609,400
GFF569
GFF570 - 60 kDa chaperonin 5, at 609,508 to 611,139
GFF570
GFF571 - Biopolymer transport protein ExbB, at 611,712 to 612,488
GFF571
Position (kb) 609
610
611
612 Strain fitness (log2 ratio) -1
0
1 at 608.564 kb on - strand, within GFF568 at 608.564 kb on - strand, within GFF568 at 608.564 kb on - strand, within GFF568 at 608.564 kb on - strand, within GFF568 at 608.614 kb on + strand, within GFF568 at 608.615 kb on - strand, within GFF568 at 608.615 kb on - strand, within GFF568 at 608.641 kb on + strand, within GFF568 at 608.932 kb on + strand at 608.933 kb on - strand at 609.536 kb on + strand at 610.006 kb on + strand, within GFF570 at 610.162 kb on + strand, within GFF570 at 610.162 kb on + strand, within GFF570 at 610.163 kb on - strand, within GFF570 at 610.163 kb on - strand, within GFF570 at 610.163 kb on - strand, within GFF570 at 610.585 kb on + strand, within GFF570 at 610.586 kb on - strand, within GFF570 at 610.586 kb on - strand, within GFF570 at 610.586 kb on - strand, within GFF570 at 610.930 kb on + strand, within GFF570 at 610.930 kb on + strand, within GFF570 at 610.930 kb on + strand, within GFF570 at 610.931 kb on - strand, within GFF570 at 610.963 kb on + strand, within GFF570 at 611.235 kb on - strand at 611.291 kb on - strand at 611.295 kb on - strand at 611.353 kb on - strand at 611.355 kb on + strand at 611.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 608,564 - GFF568 0.56 -0.3 608,564 - GFF568 0.56 +0.0 608,564 - GFF568 0.56 -0.1 608,564 - GFF568 0.56 +0.1 608,614 + GFF568 0.73 -0.2 608,615 - GFF568 0.74 +0.1 608,615 - GFF568 0.74 +0.4 608,641 + GFF568 0.83 -0.2 608,932 + -0.5 608,933 - -1.2 609,536 + +0.6 610,006 + GFF570 0.31 +0.1 610,162 + GFF570 0.40 -1.3 610,162 + GFF570 0.40 +0.1 610,163 - GFF570 0.40 +0.3 610,163 - GFF570 0.40 +0.8 610,163 - GFF570 0.40 -0.9 610,585 + GFF570 0.66 -0.3 610,586 - GFF570 0.66 +0.3 610,586 - GFF570 0.66 -0.2 610,586 - GFF570 0.66 -0.3 610,930 + GFF570 0.87 -0.6 610,930 + GFF570 0.87 +0.5 610,930 + GFF570 0.87 -0.2 610,931 - GFF570 0.87 -1.0 610,963 + GFF570 0.89 -0.2 611,235 - -1.5 611,291 - -0.3 611,295 - +0.5 611,353 - -0.3 611,355 + -0.3 611,413 - +1.3
Or see this region's nucleotide sequence