Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF538 and GFF539 are separated by 251 nucleotides GFF539 and GFF540 are separated by 139 nucleotides GFF540 and GFF541 overlap by 41 nucleotides GFF541 and GFF542 are separated by 242 nucleotides
GFF538 - hypothetical protein, at 578,365 to 581,136
GFF538
GFF539 - hypothetical protein, at 581,388 to 581,957
GFF539
GFF540 - hypothetical protein, at 582,097 to 583,722
GFF540
GFF541 - hypothetical protein, at 583,682 to 584,080
GFF541
GFF542 - Magnesium transporter MgtE, at 584,323 to 585,729
GFF542
Position (kb) 582
583
584 Strain fitness (log2 ratio) -1
0
1 at 581.251 kb on + strand at 581.252 kb on - strand at 581.271 kb on - strand at 581.389 kb on + strand at 581.389 kb on + strand at 581.467 kb on + strand, within GFF539 at 581.467 kb on + strand, within GFF539 at 581.931 kb on - strand at 582.020 kb on - strand at 582.059 kb on + strand at 582.060 kb on - strand at 582.162 kb on - strand at 582.352 kb on + strand, within GFF540 at 582.353 kb on - strand, within GFF540 at 582.353 kb on - strand, within GFF540 at 582.507 kb on + strand, within GFF540 at 582.619 kb on + strand, within GFF540 at 582.620 kb on - strand, within GFF540 at 582.701 kb on - strand, within GFF540 at 583.069 kb on - strand, within GFF540 at 583.163 kb on - strand, within GFF540 at 583.163 kb on - strand, within GFF540 at 583.245 kb on - strand, within GFF540 at 583.245 kb on - strand, within GFF540 at 583.609 kb on + strand at 583.609 kb on + strand at 583.609 kb on + strand at 583.610 kb on - strand at 583.610 kb on - strand at 583.610 kb on - strand at 583.969 kb on - strand, within GFF541 at 583.969 kb on - strand, within GFF541 at 583.969 kb on - strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 583.977 kb on + strand, within GFF541 at 584.065 kb on - strand at 584.116 kb on + strand at 584.116 kb on + strand at 584.117 kb on - strand at 584.194 kb on + strand at 584.194 kb on + strand at 584.675 kb on - strand, within GFF542 at 584.675 kb on - strand, within GFF542
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 581,251 + +0.2 581,252 - -0.4 581,271 - -0.7 581,389 + +0.0 581,389 + +0.1 581,467 + GFF539 0.14 +0.9 581,467 + GFF539 0.14 -0.1 581,931 - +0.0 582,020 - -0.1 582,059 + +1.0 582,060 - -1.1 582,162 - -0.6 582,352 + GFF540 0.16 -1.3 582,353 - GFF540 0.16 -0.6 582,353 - GFF540 0.16 -0.6 582,507 + GFF540 0.25 -0.8 582,619 + GFF540 0.32 -0.3 582,620 - GFF540 0.32 -1.3 582,701 - GFF540 0.37 -0.8 583,069 - GFF540 0.60 -0.3 583,163 - GFF540 0.66 +0.2 583,163 - GFF540 0.66 -0.0 583,245 - GFF540 0.71 -0.3 583,245 - GFF540 0.71 -1.2 583,609 + -0.1 583,609 + -0.5 583,609 + -0.3 583,610 - -0.4 583,610 - +0.5 583,610 - -0.6 583,969 - GFF541 0.72 +0.4 583,969 - GFF541 0.72 +0.5 583,969 - GFF541 0.72 +0.5 583,977 + GFF541 0.74 +0.3 583,977 + GFF541 0.74 +1.0 583,977 + GFF541 0.74 -0.5 584,065 - -0.4 584,116 + +0.0 584,116 + -0.1 584,117 - -0.3 584,194 + +0.7 584,194 + +1.0 584,675 - GFF542 0.25 +0.5 584,675 - GFF542 0.25 +0.1
Or see this region's nucleotide sequence