Strain Fitness in Xanthobacter sp. DMC5 around GFF537

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF536 and GFF537 are separated by 168 nucleotidesGFF537 and GFF538 are separated by 96 nucleotides GFF536 - Citrate synthase, at 576,139 to 577,449 GFF536 GFF537 - Molybdenum cofactor guanylyltransferase, at 577,618 to 578,268 GFF537 GFF538 - hypothetical protein, at 578,365 to 581,136 GFF538 Position (kb) 577 578 579Strain fitness (log2 ratio) -1 0 1at 577.581 kb on - strandat 577.676 kb on + strandat 577.718 kb on - strand, within GFF537at 577.872 kb on - strand, within GFF537at 578.029 kb on + strand, within GFF537at 578.051 kb on + strand, within GFF537at 578.051 kb on + strand, within GFF537at 578.052 kb on - strand, within GFF537at 578.052 kb on - strand, within GFF537at 578.052 kb on - strand, within GFF537at 578.052 kb on - strand, within GFF537at 578.180 kb on - strand, within GFF537

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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577,581 - -0.5
577,676 + -0.5
577,718 - GFF537 0.15 -0.6
577,872 - GFF537 0.39 +0.4
578,029 + GFF537 0.63 -0.6
578,051 + GFF537 0.67 +0.4
578,051 + GFF537 0.67 -0.9
578,052 - GFF537 0.67 -0.0
578,052 - GFF537 0.67 -0.8
578,052 - GFF537 0.67 -1.2
578,052 - GFF537 0.67 -0.3
578,180 - GFF537 0.86 -0.7

Or see this region's nucleotide sequence