Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF518 and GFF519 are separated by 191 nucleotides GFF519 and GFF520 are separated by 364 nucleotides
GFF518 - 3-ketoacyl-CoA thiolase, at 554,881 to 556,038
GFF518
GFF519 - HTH-type transcriptional regulator CueR, at 556,230 to 556,670
GFF519
GFF520 - Long-chain fatty acid transport protein, at 557,035 to 558,387
GFF520
Position (kb) 556
557 Strain fitness (log2 ratio) -1
0
1
2
3 at 555.272 kb on + strand, within GFF518 at 555.272 kb on + strand, within GFF518 at 555.273 kb on - strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.596 kb on + strand, within GFF518 at 555.597 kb on - strand, within GFF518 at 555.597 kb on - strand, within GFF518 at 555.617 kb on + strand, within GFF518 at 555.617 kb on + strand, within GFF518 at 555.618 kb on - strand, within GFF518 at 555.618 kb on - strand, within GFF518 at 555.618 kb on - strand, within GFF518 at 556.129 kb on - strand at 556.297 kb on + strand, within GFF519 at 556.418 kb on - strand, within GFF519 at 556.430 kb on - strand, within GFF519 at 556.430 kb on - strand, within GFF519 at 556.706 kb on + strand at 556.707 kb on - strand at 556.707 kb on - strand at 556.961 kb on + strand at 556.962 kb on - strand at 556.983 kb on + strand at 557.020 kb on + strand at 557.021 kb on - strand at 557.021 kb on - strand at 557.182 kb on + strand, within GFF520 at 557.182 kb on + strand, within GFF520 at 557.302 kb on + strand, within GFF520 at 557.302 kb on + strand, within GFF520 at 557.303 kb on - strand, within GFF520 at 557.303 kb on - strand, within GFF520 at 557.428 kb on + strand, within GFF520 at 557.429 kb on - strand, within GFF520 at 557.429 kb on - strand, within GFF520 at 557.429 kb on - strand, within GFF520 at 557.429 kb on - strand, within GFF520 at 557.429 kb on - strand, within GFF520 at 557.429 kb on - strand, within GFF520 at 557.429 kb on - strand, within GFF520 at 557.481 kb on - strand, within GFF520 at 557.481 kb on - strand, within GFF520 at 557.481 kb on - strand, within GFF520 at 557.484 kb on + strand, within GFF520 at 557.618 kb on - strand, within GFF520
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 555,272 + GFF518 0.34 +2.7 555,272 + GFF518 0.34 +2.8 555,273 - GFF518 0.34 +1.3 555,596 + GFF518 0.62 +2.6 555,596 + GFF518 0.62 +2.1 555,596 + GFF518 0.62 +2.5 555,596 + GFF518 0.62 +2.6 555,597 - GFF518 0.62 +1.7 555,597 - GFF518 0.62 +0.4 555,617 + GFF518 0.64 +3.1 555,617 + GFF518 0.64 +2.2 555,618 - GFF518 0.64 +1.7 555,618 - GFF518 0.64 +1.8 555,618 - GFF518 0.64 +2.5 556,129 - -0.3 556,297 + GFF519 0.15 +1.4 556,418 - GFF519 0.43 -0.9 556,430 - GFF519 0.45 +0.6 556,430 - GFF519 0.45 +1.0 556,706 + +1.9 556,707 - +2.1 556,707 - +1.6 556,961 + -0.3 556,962 - +1.1 556,983 + +1.0 557,020 + +2.3 557,021 - +1.8 557,021 - +1.6 557,182 + GFF520 0.11 +1.6 557,182 + GFF520 0.11 +0.2 557,302 + GFF520 0.20 +0.5 557,302 + GFF520 0.20 -1.2 557,303 - GFF520 0.20 +0.4 557,303 - GFF520 0.20 -1.3 557,428 + GFF520 0.29 +0.9 557,429 - GFF520 0.29 +1.3 557,429 - GFF520 0.29 -0.5 557,429 - GFF520 0.29 +0.0 557,429 - GFF520 0.29 -0.2 557,429 - GFF520 0.29 +0.4 557,429 - GFF520 0.29 +0.5 557,429 - GFF520 0.29 -0.3 557,481 - GFF520 0.33 -0.3 557,481 - GFF520 0.33 +0.3 557,481 - GFF520 0.33 +0.3 557,484 + GFF520 0.33 -0.4 557,618 - GFF520 0.43 +0.3
Or see this region's nucleotide sequence