Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF502 and GFF503 are separated by 153 nucleotides GFF503 and GFF504 overlap by 1 nucleotides
GFF502 - HTH-type transcriptional regulator GltR, at 533,416 to 534,240
GFF502
GFF503 - Hercynine oxygenase, at 534,394 to 535,704
GFF503
GFF504 - Histidine N-alpha-methyltransferase, at 535,704 to 536,675
GFF504
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2 at 533.617 kb on + strand, within GFF502 at 534.324 kb on + strand at 534.325 kb on - strand at 534.325 kb on - strand at 534.351 kb on - strand at 534.643 kb on + strand, within GFF503 at 534.685 kb on + strand, within GFF503 at 534.689 kb on - strand, within GFF503 at 534.766 kb on + strand, within GFF503 at 534.767 kb on - strand, within GFF503 at 534.767 kb on - strand, within GFF503 at 534.940 kb on + strand, within GFF503 at 534.997 kb on + strand, within GFF503 at 534.998 kb on - strand, within GFF503 at 535.045 kb on + strand, within GFF503 at 535.045 kb on + strand, within GFF503 at 535.045 kb on + strand, within GFF503 at 535.046 kb on - strand, within GFF503 at 535.207 kb on + strand, within GFF503 at 535.207 kb on + strand, within GFF503 at 535.208 kb on - strand, within GFF503 at 535.223 kb on - strand, within GFF503 at 535.312 kb on + strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.313 kb on - strand, within GFF503 at 535.315 kb on + strand, within GFF503 at 535.316 kb on - strand, within GFF503 at 535.508 kb on - strand, within GFF503 at 535.508 kb on - strand, within GFF503 at 535.508 kb on - strand, within GFF503 at 535.556 kb on - strand, within GFF503 at 535.636 kb on + strand at 535.636 kb on + strand at 535.637 kb on - strand at 535.637 kb on - strand at 535.651 kb on + strand at 535.652 kb on - strand at 535.879 kb on - strand, within GFF504 at 535.881 kb on + strand, within GFF504 at 536.032 kb on - strand, within GFF504 at 536.032 kb on - strand, within GFF504 at 536.094 kb on + strand, within GFF504 at 536.328 kb on + strand, within GFF504 at 536.360 kb on - strand, within GFF504 at 536.559 kb on + strand, within GFF504 at 536.560 kb on - strand, within GFF504 at 536.566 kb on - strand, within GFF504
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 533,617 + GFF502 0.24 +0.1 534,324 + -0.2 534,325 - +1.3 534,325 - +0.3 534,351 - +0.4 534,643 + GFF503 0.19 +0.1 534,685 + GFF503 0.22 -0.1 534,689 - GFF503 0.23 +0.3 534,766 + GFF503 0.28 -0.4 534,767 - GFF503 0.28 -0.2 534,767 - GFF503 0.28 +0.7 534,940 + GFF503 0.42 -0.2 534,997 + GFF503 0.46 -0.3 534,998 - GFF503 0.46 +0.2 535,045 + GFF503 0.50 -0.1 535,045 + GFF503 0.50 +0.1 535,045 + GFF503 0.50 -0.3 535,046 - GFF503 0.50 +1.9 535,207 + GFF503 0.62 +0.4 535,207 + GFF503 0.62 +0.2 535,208 - GFF503 0.62 +0.1 535,223 - GFF503 0.63 +0.7 535,312 + GFF503 0.70 +0.1 535,313 - GFF503 0.70 +0.1 535,313 - GFF503 0.70 +0.3 535,313 - GFF503 0.70 +0.2 535,313 - GFF503 0.70 -0.1 535,313 - GFF503 0.70 -0.2 535,315 + GFF503 0.70 -0.5 535,316 - GFF503 0.70 -0.0 535,508 - GFF503 0.85 +0.1 535,508 - GFF503 0.85 +0.5 535,508 - GFF503 0.85 -0.1 535,556 - GFF503 0.89 +0.0 535,636 + +0.9 535,636 + +0.2 535,637 - -0.2 535,637 - +0.3 535,651 + -1.6 535,652 - +0.0 535,879 - GFF504 0.18 -1.0 535,881 + GFF504 0.18 -0.1 536,032 - GFF504 0.34 -0.6 536,032 - GFF504 0.34 -1.8 536,094 + GFF504 0.40 -0.1 536,328 + GFF504 0.64 -0.1 536,360 - GFF504 0.67 +0.0 536,559 + GFF504 0.88 +0.4 536,560 - GFF504 0.88 -0.4 536,566 - GFF504 0.89 +0.2
Or see this region's nucleotide sequence