Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4914 and GFF4915 are separated by 78 nucleotides GFF4915 and GFF4916 overlap by 4 nucleotides GFF4916 and GFF4917 are separated by 229 nucleotides
GFF4914 - hypothetical protein, at 20,059 to 21,699
GFF4914
GFF4915 - Adaptive-response sensory-kinase SasA, at 21,778 to 23,100
GFF4915
GFF4916 - Transcriptional regulatory protein OmpR, at 23,097 to 23,822
GFF4916
GFF4917 - hypothetical protein, at 24,052 to 24,378
GFF4917
Position (kb) 21
22
23
24 Strain fitness (log2 ratio) -1
0
1 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.801 kb on + strand, within GFF4914 at 20.802 kb on - strand, within GFF4914 at 20.802 kb on - strand, within GFF4914 at 20.802 kb on - strand, within GFF4914 at 20.802 kb on - strand, within GFF4914 at 21.286 kb on + strand, within GFF4914 at 21.389 kb on + strand, within GFF4914 at 21.389 kb on + strand, within GFF4914 at 21.390 kb on - strand, within GFF4914 at 21.390 kb on - strand, within GFF4914 at 21.390 kb on - strand, within GFF4914 at 21.390 kb on - strand, within GFF4914 at 21.498 kb on + strand, within GFF4914 at 21.498 kb on + strand, within GFF4914 at 21.498 kb on + strand, within GFF4914 at 21.499 kb on - strand, within GFF4914 at 21.499 kb on - strand, within GFF4914 at 21.499 kb on - strand, within GFF4914 at 21.720 kb on + strand at 21.720 kb on + strand at 21.721 kb on - strand at 21.776 kb on + strand at 21.776 kb on + strand at 21.776 kb on + strand at 21.777 kb on - strand at 22.192 kb on - strand, within GFF4915 at 22.256 kb on + strand, within GFF4915 at 22.256 kb on + strand, within GFF4915 at 22.256 kb on + strand, within GFF4915 at 22.257 kb on - strand, within GFF4915 at 22.257 kb on - strand, within GFF4915 at 22.759 kb on + strand, within GFF4915 at 22.759 kb on + strand, within GFF4915 at 22.760 kb on - strand, within GFF4915 at 23.009 kb on + strand at 23.009 kb on + strand at 23.010 kb on - strand at 23.128 kb on + strand at 23.128 kb on + strand at 23.317 kb on + strand, within GFF4916 at 23.318 kb on - strand, within GFF4916 at 23.510 kb on - strand, within GFF4916 at 23.856 kb on + strand at 23.857 kb on - strand at 23.857 kb on - strand at 23.883 kb on + strand at 23.932 kb on + strand at 23.933 kb on - strand at 23.933 kb on - strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.953 kb on + strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 23.954 kb on - strand at 24.011 kb on + strand at 24.011 kb on + strand at 24.012 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 20,801 + GFF4914 0.45 +0.8 20,801 + GFF4914 0.45 -0.7 20,801 + GFF4914 0.45 -0.1 20,801 + GFF4914 0.45 +0.3 20,801 + GFF4914 0.45 +0.0 20,802 - GFF4914 0.45 -0.7 20,802 - GFF4914 0.45 -0.6 20,802 - GFF4914 0.45 -0.3 20,802 - GFF4914 0.45 -0.0 21,286 + GFF4914 0.75 +0.4 21,389 + GFF4914 0.81 -0.2 21,389 + GFF4914 0.81 +0.2 21,390 - GFF4914 0.81 +1.3 21,390 - GFF4914 0.81 -0.3 21,390 - GFF4914 0.81 +0.3 21,390 - GFF4914 0.81 +0.8 21,498 + GFF4914 0.88 -0.1 21,498 + GFF4914 0.88 -0.6 21,498 + GFF4914 0.88 -0.7 21,499 - GFF4914 0.88 -0.4 21,499 - GFF4914 0.88 -0.3 21,499 - GFF4914 0.88 +0.0 21,720 + -0.5 21,720 + +0.0 21,721 - -1.2 21,776 + -0.7 21,776 + +0.5 21,776 + -1.3 21,777 - -0.0 22,192 - GFF4915 0.31 +0.4 22,256 + GFF4915 0.36 -0.1 22,256 + GFF4915 0.36 -0.0 22,256 + GFF4915 0.36 -0.0 22,257 - GFF4915 0.36 -1.6 22,257 - GFF4915 0.36 +0.6 22,759 + GFF4915 0.74 -0.4 22,759 + GFF4915 0.74 -0.5 22,760 - GFF4915 0.74 -0.2 23,009 + +1.3 23,009 + -0.9 23,010 - -0.9 23,128 + +1.0 23,128 + +1.1 23,317 + GFF4916 0.30 -0.3 23,318 - GFF4916 0.30 -0.6 23,510 - GFF4916 0.57 -0.5 23,856 + -0.2 23,857 - -0.5 23,857 - +0.1 23,883 + +0.3 23,932 + +0.8 23,933 - -0.5 23,933 - +0.3 23,953 + +0.1 23,953 + -1.2 23,953 + +0.4 23,954 - +0.2 23,954 - +0.3 23,954 - +0.6 23,954 - -0.3 23,954 - +0.2 23,954 - +0.1 24,011 + -0.8 24,011 + +0.5 24,012 - +0.1
Or see this region's nucleotide sequence