Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4878 and GFF4879 are separated by 57 nucleotides GFF4879 and GFF4880 are separated by 73 nucleotides GFF4880 and GFF4881 are separated by 187 nucleotides
GFF4878 - hypothetical protein, at 26,321 to 27,295
GFF4878
GFF4879 - hypothetical protein, at 27,353 to 27,835
GFF4879
GFF4880 - hypothetical protein, at 27,909 to 28,304
GFF4880
GFF4881 - hypothetical protein, at 28,492 to 28,971
GFF4881
Position (kb) 27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 26.362 kb on - strand at 26.398 kb on + strand at 26.398 kb on + strand at 26.445 kb on + strand, within GFF4878 at 26.446 kb on - strand, within GFF4878 at 26.615 kb on + strand, within GFF4878 at 26.615 kb on + strand, within GFF4878 at 26.616 kb on - strand, within GFF4878 at 26.616 kb on - strand, within GFF4878 at 26.616 kb on - strand, within GFF4878 at 26.783 kb on + strand, within GFF4878 at 26.783 kb on + strand, within GFF4878 at 26.783 kb on + strand, within GFF4878 at 27.036 kb on - strand, within GFF4878 at 27.293 kb on + strand at 27.294 kb on - strand at 27.294 kb on - strand at 27.346 kb on + strand at 27.346 kb on + strand at 27.347 kb on - strand at 27.381 kb on - strand at 27.514 kb on - strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.548 kb on + strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.549 kb on - strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.650 kb on + strand, within GFF4879 at 27.651 kb on - strand, within GFF4879 at 27.651 kb on - strand, within GFF4879 at 27.651 kb on - strand, within GFF4879 at 27.690 kb on - strand, within GFF4879 at 27.690 kb on - strand, within GFF4879 at 27.793 kb on - strand at 27.867 kb on + strand at 27.867 kb on + strand at 27.867 kb on + strand at 27.868 kb on - strand at 27.868 kb on - strand at 27.873 kb on - strand at 28.071 kb on + strand, within GFF4880 at 28.071 kb on + strand, within GFF4880 at 28.071 kb on + strand, within GFF4880 at 28.072 kb on - strand, within GFF4880 at 28.072 kb on - strand, within GFF4880 at 28.383 kb on + strand at 28.384 kb on - strand at 28.681 kb on + strand, within GFF4881 at 28.682 kb on - strand, within GFF4881 at 28.682 kb on - strand, within GFF4881 at 28.682 kb on - strand, within GFF4881
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 26,362 - +0.0 26,398 + -0.3 26,398 + +0.4 26,445 + GFF4878 0.13 -0.3 26,446 - GFF4878 0.13 -0.7 26,615 + GFF4878 0.30 -1.2 26,615 + GFF4878 0.30 +0.1 26,616 - GFF4878 0.30 +1.1 26,616 - GFF4878 0.30 -0.8 26,616 - GFF4878 0.30 -0.3 26,783 + GFF4878 0.47 -1.5 26,783 + GFF4878 0.47 -0.2 26,783 + GFF4878 0.47 +0.1 27,036 - GFF4878 0.73 +0.1 27,293 + +0.2 27,294 - -0.8 27,294 - -0.6 27,346 + +0.9 27,346 + -0.1 27,347 - -0.1 27,381 - +0.7 27,514 - GFF4879 0.33 +0.0 27,548 + GFF4879 0.40 -1.9 27,548 + GFF4879 0.40 -0.1 27,548 + GFF4879 0.40 -0.2 27,548 + GFF4879 0.40 -0.1 27,548 + GFF4879 0.40 +1.0 27,549 - GFF4879 0.41 -1.6 27,549 - GFF4879 0.41 +0.3 27,549 - GFF4879 0.41 +0.9 27,549 - GFF4879 0.41 +0.1 27,549 - GFF4879 0.41 -1.5 27,650 + GFF4879 0.61 +0.8 27,650 + GFF4879 0.61 +0.1 27,650 + GFF4879 0.61 -1.0 27,650 + GFF4879 0.61 -1.2 27,650 + GFF4879 0.61 +0.0 27,651 - GFF4879 0.62 -0.0 27,651 - GFF4879 0.62 -0.6 27,651 - GFF4879 0.62 -0.2 27,690 - GFF4879 0.70 -0.7 27,690 - GFF4879 0.70 -0.7 27,793 - +0.6 27,867 + +0.9 27,867 + -0.3 27,867 + -0.2 27,868 - -0.2 27,868 - -0.8 27,873 - +0.6 28,071 + GFF4880 0.41 +1.3 28,071 + GFF4880 0.41 +0.5 28,071 + GFF4880 0.41 -0.2 28,072 - GFF4880 0.41 +0.1 28,072 - GFF4880 0.41 +0.5 28,383 + +0.0 28,384 - +0.7 28,681 + GFF4881 0.39 +0.9 28,682 - GFF4881 0.40 +0.4 28,682 - GFF4881 0.40 -0.9 28,682 - GFF4881 0.40 -0.2
Or see this region's nucleotide sequence