Strain Fitness in Xanthobacter sp. DMC5 around GFF4846

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4845 and GFF4846 are separated by 9 nucleotidesGFF4846 and GFF4847 are separated by 40 nucleotidesGFF4847 and GFF4848 are separated by 9 nucleotidesGFF4848 and GFF4849 are separated by 19 nucleotides GFF4845 - Light-independent protochlorophyllide reductase subunit B, at 3,381 to 5,276 GFF4845 GFF4846 - Nitrogenase molybdenum-iron protein beta chain, at 5,286 to 6,725 GFF4846 GFF4847 - hypothetical protein, at 6,766 to 7,161 GFF4847 GFF4848 - hypothetical protein, at 7,171 to 7,641 GFF4848 GFF4849 - hypothetical protein, at 7,661 to 7,861 GFF4849 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 4.542 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.659 kb on + strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.660 kb on - strand, within GFF4845at 4.661 kb on + strand, within GFF4845at 4.661 kb on + strand, within GFF4845at 4.662 kb on - strand, within GFF4845at 4.668 kb on + strand, within GFF4845at 4.668 kb on + strand, within GFF4845at 4.669 kb on - strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.713 kb on + strand, within GFF4845at 4.714 kb on - strand, within GFF4845at 4.714 kb on - strand, within GFF4845at 4.859 kb on + strand, within GFF4845at 4.860 kb on - strand, within GFF4845at 4.915 kb on - strand, within GFF4845at 5.274 kb on + strandat 5.274 kb on + strandat 5.274 kb on + strandat 5.275 kb on - strandat 5.275 kb on - strandat 5.312 kb on - strandat 5.348 kb on + strandat 5.349 kb on - strandat 5.349 kb on - strandat 5.434 kb on + strand, within GFF4846at 5.435 kb on - strand, within GFF4846at 5.435 kb on - strand, within GFF4846at 5.435 kb on - strand, within GFF4846at 5.547 kb on + strand, within GFF4846at 5.547 kb on + strand, within GFF4846at 5.548 kb on - strand, within GFF4846at 5.548 kb on - strand, within GFF4846at 5.625 kb on + strand, within GFF4846at 5.625 kb on + strand, within GFF4846at 5.625 kb on + strand, within GFF4846at 5.626 kb on - strand, within GFF4846at 5.626 kb on - strand, within GFF4846at 5.626 kb on - strand, within GFF4846at 5.649 kb on + strand, within GFF4846at 5.650 kb on - strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.679 kb on + strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 5.680 kb on - strand, within GFF4846at 6.067 kb on - strand, within GFF4846at 6.471 kb on + strand, within GFF4846at 6.471 kb on + strand, within GFF4846at 6.471 kb on + strand, within GFF4846at 6.472 kb on - strand, within GFF4846at 6.472 kb on - strand, within GFF4846at 6.660 kb on - strandat 6.841 kb on + strand, within GFF4847at 6.841 kb on + strand, within GFF4847at 6.841 kb on + strand, within GFF4847at 6.841 kb on + strand, within GFF4847at 6.842 kb on - strand, within GFF4847at 6.842 kb on - strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.967 kb on + strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 6.968 kb on - strand, within GFF4847at 7.019 kb on + strand, within GFF4847at 7.020 kb on + strand, within GFF4847at 7.166 kb on + strandat 7.167 kb on - strandat 7.309 kb on + strand, within GFF4848at 7.309 kb on + strand, within GFF4848at 7.310 kb on - strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.311 kb on + strand, within GFF4848at 7.312 kb on - strand, within GFF4848at 7.695 kb on - strand, within GFF4849

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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4,542 + GFF4845 0.61 -0.3
4,659 + GFF4845 0.67 +0.6
4,659 + GFF4845 0.67 -0.5
4,659 + GFF4845 0.67 -1.1
4,659 + GFF4845 0.67 -0.7
4,659 + GFF4845 0.67 -1.3
4,660 - GFF4845 0.67 +0.0
4,660 - GFF4845 0.67 -1.0
4,660 - GFF4845 0.67 -0.1
4,660 - GFF4845 0.67 +0.5
4,661 + GFF4845 0.68 -0.3
4,661 + GFF4845 0.68 -0.8
4,662 - GFF4845 0.68 -0.2
4,668 + GFF4845 0.68 -1.9
4,668 + GFF4845 0.68 +0.4
4,669 - GFF4845 0.68 -0.4
4,713 + GFF4845 0.70 +0.3
4,713 + GFF4845 0.70 +0.1
4,713 + GFF4845 0.70 +0.1
4,713 + GFF4845 0.70 +0.7
4,713 + GFF4845 0.70 +0.0
4,714 - GFF4845 0.70 +0.6
4,714 - GFF4845 0.70 +0.3
4,859 + GFF4845 0.78 +0.5
4,860 - GFF4845 0.78 +0.2
4,915 - GFF4845 0.81 -0.8
5,274 + -0.7
5,274 + +0.7
5,274 + -0.3
5,275 - -0.5
5,275 - +0.2
5,312 - +0.5
5,348 + +0.5
5,349 - +0.4
5,349 - +0.0
5,434 + GFF4846 0.10 +0.3
5,435 - GFF4846 0.10 +0.3
5,435 - GFF4846 0.10 -0.4
5,435 - GFF4846 0.10 +0.3
5,547 + GFF4846 0.18 +1.7
5,547 + GFF4846 0.18 -0.4
5,548 - GFF4846 0.18 +0.3
5,548 - GFF4846 0.18 +0.4
5,625 + GFF4846 0.24 -0.2
5,625 + GFF4846 0.24 +0.7
5,625 + GFF4846 0.24 -0.6
5,626 - GFF4846 0.24 -0.7
5,626 - GFF4846 0.24 -0.6
5,626 - GFF4846 0.24 -0.5
5,649 + GFF4846 0.25 +1.1
5,650 - GFF4846 0.25 +0.3
5,679 + GFF4846 0.27 -0.3
5,679 + GFF4846 0.27 -0.1
5,679 + GFF4846 0.27 +0.3
5,679 + GFF4846 0.27 +0.1
5,679 + GFF4846 0.27 +0.3
5,679 + GFF4846 0.27 +0.7
5,680 - GFF4846 0.27 +0.1
5,680 - GFF4846 0.27 -0.2
5,680 - GFF4846 0.27 +0.7
5,680 - GFF4846 0.27 +0.3
6,067 - GFF4846 0.54 +0.8
6,471 + GFF4846 0.82 +0.7
6,471 + GFF4846 0.82 -0.1
6,471 + GFF4846 0.82 -0.1
6,472 - GFF4846 0.82 +1.6
6,472 - GFF4846 0.82 +0.1
6,660 - +0.9
6,841 + GFF4847 0.19 -0.5
6,841 + GFF4847 0.19 +0.2
6,841 + GFF4847 0.19 -1.4
6,841 + GFF4847 0.19 +0.2
6,842 - GFF4847 0.19 +0.7
6,842 - GFF4847 0.19 +0.1
6,967 + GFF4847 0.51 +0.5
6,967 + GFF4847 0.51 -0.2
6,967 + GFF4847 0.51 -1.8
6,967 + GFF4847 0.51 -1.2
6,968 - GFF4847 0.51 -0.3
6,968 - GFF4847 0.51 -1.1
6,968 - GFF4847 0.51 +0.2
6,968 - GFF4847 0.51 -0.0
6,968 - GFF4847 0.51 +0.2
6,968 - GFF4847 0.51 +0.5
6,968 - GFF4847 0.51 -0.2
6,968 - GFF4847 0.51 -0.2
6,968 - GFF4847 0.51 -0.3
7,019 + GFF4847 0.64 +0.1
7,020 + GFF4847 0.64 -0.7
7,166 + +0.1
7,167 - +0.1
7,309 + GFF4848 0.29 -0.1
7,309 + GFF4848 0.29 -0.8
7,310 - GFF4848 0.30 -0.0
7,311 + GFF4848 0.30 -0.3
7,311 + GFF4848 0.30 -0.3
7,311 + GFF4848 0.30 +0.3
7,311 + GFF4848 0.30 +0.6
7,311 + GFF4848 0.30 +0.5
7,312 - GFF4848 0.30 +0.9
7,695 - GFF4849 0.17 +0.9

Or see this region's nucleotide sequence