Strain Fitness in Xanthobacter sp. DMC5 around GFF4843

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4843 and GFF4844 are separated by 98 nucleotides GFF4843 - Nitrogenase molybdenum-iron protein alpha chain, at 85 to 1,590 GFF4843 GFF4844 - Nitrogenase molybdenum-iron protein beta chain, at 1,689 to 3,248 GFF4844 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.251 kb on - strand, within GFF4843at 0.289 kb on + strand, within GFF4843at 0.290 kb on - strand, within GFF4843at 0.290 kb on - strand, within GFF4843at 0.370 kb on + strand, within GFF4843at 0.371 kb on - strand, within GFF4843at 0.371 kb on - strand, within GFF4843at 0.394 kb on + strand, within GFF4843at 0.394 kb on + strand, within GFF4843at 0.394 kb on + strand, within GFF4843at 0.394 kb on + strand, within GFF4843at 0.395 kb on - strand, within GFF4843at 0.397 kb on + strand, within GFF4843at 0.397 kb on + strand, within GFF4843at 0.398 kb on - strand, within GFF4843at 0.398 kb on - strand, within GFF4843at 0.398 kb on - strand, within GFF4843at 0.619 kb on + strand, within GFF4843at 0.619 kb on + strand, within GFF4843at 0.619 kb on + strand, within GFF4843at 0.620 kb on - strand, within GFF4843at 0.620 kb on - strand, within GFF4843at 0.620 kb on - strand, within GFF4843at 0.769 kb on + strand, within GFF4843at 0.770 kb on - strand, within GFF4843at 0.793 kb on + strand, within GFF4843at 0.793 kb on + strand, within GFF4843at 0.793 kb on + strand, within GFF4843at 0.794 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.935 kb on - strand, within GFF4843at 0.935 kb on - strand, within GFF4843at 0.935 kb on - strand, within GFF4843at 0.949 kb on + strand, within GFF4843at 0.949 kb on + strand, within GFF4843at 0.949 kb on + strand, within GFF4843at 0.950 kb on - strand, within GFF4843at 0.997 kb on + strand, within GFF4843at 0.998 kb on - strand, within GFF4843at 0.998 kb on - strand, within GFF4843at 1.051 kb on + strand, within GFF4843at 1.099 kb on + strand, within GFF4843at 1.099 kb on + strand, within GFF4843at 1.100 kb on - strand, within GFF4843at 1.132 kb on + strand, within GFF4843at 1.168 kb on + strand, within GFF4843at 1.168 kb on + strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.208 kb on - strand, within GFF4843at 1.208 kb on - strand, within GFF4843at 1.208 kb on - strand, within GFF4843at 1.244 kb on - strand, within GFF4843at 1.267 kb on + strand, within GFF4843at 1.267 kb on + strand, within GFF4843at 1.268 kb on - strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.289 kb on - strand, within GFF4843at 1.289 kb on - strand, within GFF4843at 1.312 kb on + strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.331 kb on - strand, within GFF4843at 1.396 kb on + strand, within GFF4843at 1.397 kb on - strand, within GFF4843at 1.397 kb on - strand, within GFF4843at 1.397 kb on - strand, within GFF4843at 1.447 kb on + strandat 1.447 kb on + strandat 1.447 kb on + strandat 1.447 kb on + strandat 1.448 kb on - strandat 1.448 kb on - strandat 1.459 kb on + strandat 1.459 kb on + strandat 1.460 kb on - strandat 1.460 kb on - strandat 1.661 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.677 kb on + strandat 1.678 kb on - strandat 1.981 kb on - strand, within GFF4844at 1.981 kb on - strand, within GFF4844at 1.981 kb on - strand, within GFF4844at 1.983 kb on + strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 2.103 kb on + strand, within GFF4844at 2.104 kb on - strand, within GFF4844at 2.112 kb on + strand, within GFF4844at 2.200 kb on - strand, within GFF4844at 2.223 kb on + strand, within GFF4844at 2.224 kb on - strand, within GFF4844at 2.224 kb on - strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.451 kb on + strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.514 kb on + strand, within GFF4844at 2.514 kb on + strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.586 kb on + strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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251 - GFF4843 0.11 -0.1
289 + GFF4843 0.14 +0.4
290 - GFF4843 0.14 +0.8
290 - GFF4843 0.14 -0.3
370 + GFF4843 0.19 -0.2
371 - GFF4843 0.19 +0.6
371 - GFF4843 0.19 +0.0
394 + GFF4843 0.21 +0.5
394 + GFF4843 0.21 +0.4
394 + GFF4843 0.21 -0.0
394 + GFF4843 0.21 -0.1
395 - GFF4843 0.21 -0.6
397 + GFF4843 0.21 -0.5
397 + GFF4843 0.21 +0.4
398 - GFF4843 0.21 +0.9
398 - GFF4843 0.21 -0.5
398 - GFF4843 0.21 +0.2
619 + GFF4843 0.35 +0.6
619 + GFF4843 0.35 +0.7
619 + GFF4843 0.35 +1.3
620 - GFF4843 0.36 -0.0
620 - GFF4843 0.36 -0.0
620 - GFF4843 0.36 -0.3
769 + GFF4843 0.45 +0.1
770 - GFF4843 0.45 -0.1
793 + GFF4843 0.47 -0.1
793 + GFF4843 0.47 +0.1
793 + GFF4843 0.47 +2.5
794 - GFF4843 0.47 -0.2
826 - GFF4843 0.49 +0.1
826 - GFF4843 0.49 -0.0
826 - GFF4843 0.49 -0.0
826 - GFF4843 0.49 +0.5
935 - GFF4843 0.56 +0.2
935 - GFF4843 0.56 +1.7
935 - GFF4843 0.56 +0.0
949 + GFF4843 0.57 -0.4
949 + GFF4843 0.57 +1.3
949 + GFF4843 0.57 +0.2
950 - GFF4843 0.57 -0.7
997 + GFF4843 0.61 +0.5
998 - GFF4843 0.61 -0.6
998 - GFF4843 0.61 -0.4
1,051 + GFF4843 0.64 +0.4
1,099 + GFF4843 0.67 +1.0
1,099 + GFF4843 0.67 -0.3
1,100 - GFF4843 0.67 -1.4
1,132 + GFF4843 0.70 -0.3
1,168 + GFF4843 0.72 -0.4
1,168 + GFF4843 0.72 -0.7
1,169 - GFF4843 0.72 +0.5
1,169 - GFF4843 0.72 +0.1
1,169 - GFF4843 0.72 +0.6
1,169 - GFF4843 0.72 -0.1
1,208 - GFF4843 0.75 -0.3
1,208 - GFF4843 0.75 -1.6
1,208 - GFF4843 0.75 +0.0
1,244 - GFF4843 0.77 -0.4
1,267 + GFF4843 0.78 +0.5
1,267 + GFF4843 0.78 +0.4
1,268 - GFF4843 0.79 +0.1
1,288 + GFF4843 0.80 +0.1
1,288 + GFF4843 0.80 +0.2
1,288 + GFF4843 0.80 +1.8
1,288 + GFF4843 0.80 +0.4
1,289 - GFF4843 0.80 -0.3
1,289 - GFF4843 0.80 -0.3
1,312 + GFF4843 0.81 -0.0
1,313 - GFF4843 0.82 +0.0
1,313 - GFF4843 0.82 -0.5
1,313 - GFF4843 0.82 +0.6
1,313 - GFF4843 0.82 -0.4
1,313 - GFF4843 0.82 +0.2
1,313 - GFF4843 0.82 +0.3
1,331 - GFF4843 0.83 +0.6
1,396 + GFF4843 0.87 +0.9
1,397 - GFF4843 0.87 -1.9
1,397 - GFF4843 0.87 +0.1
1,397 - GFF4843 0.87 -0.2
1,447 + -0.7
1,447 + +0.8
1,447 + +0.1
1,447 + +0.1
1,448 - -0.2
1,448 - -0.1
1,459 + -1.2
1,459 + +0.3
1,460 - -0.3
1,460 - +0.7
1,661 + -0.3
1,674 + +0.4
1,674 + -0.4
1,674 + -0.2
1,674 + +0.0
1,674 + -0.4
1,674 + +0.1
1,674 + -1.6
1,674 + -0.3
1,674 + -0.8
1,675 - +0.0
1,675 - +0.1
1,675 - -0.3
1,675 - -0.7
1,675 - -0.4
1,675 - -0.2
1,675 - +0.4
1,675 - +0.4
1,677 + -0.6
1,678 - +0.7
1,981 - GFF4844 0.19 +0.4
1,981 - GFF4844 0.19 -0.9
1,981 - GFF4844 0.19 -0.5
1,983 + GFF4844 0.19 +0.1
1,984 - GFF4844 0.19 +0.0
1,984 - GFF4844 0.19 -0.5
1,984 - GFF4844 0.19 +0.5
1,984 - GFF4844 0.19 +0.4
2,103 + GFF4844 0.27 -1.0
2,104 - GFF4844 0.27 +0.5
2,112 + GFF4844 0.27 +0.2
2,200 - GFF4844 0.33 -0.0
2,223 + GFF4844 0.34 +0.5
2,224 - GFF4844 0.34 -0.5
2,224 - GFF4844 0.34 -0.5
2,394 + GFF4844 0.45 +0.0
2,394 + GFF4844 0.45 -0.1
2,394 + GFF4844 0.45 +0.2
2,394 + GFF4844 0.45 -0.3
2,394 + GFF4844 0.45 +0.3
2,394 + GFF4844 0.45 +0.3
2,395 - GFF4844 0.45 -0.7
2,395 - GFF4844 0.45 +1.5
2,395 - GFF4844 0.45 -0.4
2,451 + GFF4844 0.49 +0.3
2,452 - GFF4844 0.49 -0.4
2,452 - GFF4844 0.49 +0.7
2,452 - GFF4844 0.49 +0.5
2,514 + GFF4844 0.53 -0.2
2,514 + GFF4844 0.53 -0.2
2,515 - GFF4844 0.53 -0.1
2,515 - GFF4844 0.53 -0.2
2,515 - GFF4844 0.53 -1.5
2,515 - GFF4844 0.53 -0.3
2,515 - GFF4844 0.53 -1.0
2,515 - GFF4844 0.53 +0.2
2,515 - GFF4844 0.53 -0.3
2,586 + GFF4844 0.57 +0.8
2,587 - GFF4844 0.58 +0.3
2,587 - GFF4844 0.58 -0.6
2,587 - GFF4844 0.58 -0.2
2,587 - GFF4844 0.58 -1.3

Or see this region's nucleotide sequence