Strain Fitness in Xanthobacter sp. DMC5 around GFF4836

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4834 and GFF4835 overlap by 8 nucleotidesGFF4835 and GFF4836 are separated by 44 nucleotidesGFF4836 and GFF4837 are separated by 152 nucleotidesGFF4837 and GFF4838 are separated by 31 nucleotides GFF4834 - Regulatory protein AtoC, at 73,943 to 75,337 GFF4834 GFF4835 - hypothetical protein, at 75,330 to 76,175 GFF4835 GFF4836 - Divalent metal cation transporter MntH, at 76,220 to 77,530 GFF4836 GFF4837 - hypothetical protein, at 77,683 to 78,315 GFF4837 GFF4838 - hypothetical protein, at 78,347 to 78,967 GFF4838 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.335 kb on + strandat 75.335 kb on + strandat 75.336 kb on - strandat 75.336 kb on - strandat 75.517 kb on - strand, within GFF4835at 75.517 kb on - strand, within GFF4835at 75.747 kb on + strand, within GFF4835at 75.758 kb on - strand, within GFF4835at 75.918 kb on + strand, within GFF4835at 76.020 kb on + strand, within GFF4835at 76.021 kb on - strand, within GFF4835at 76.021 kb on - strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.027 kb on + strand, within GFF4835at 76.028 kb on - strand, within GFF4835at 76.028 kb on - strand, within GFF4835at 76.053 kb on + strand, within GFF4835at 76.053 kb on + strand, within GFF4835at 76.054 kb on - strand, within GFF4835at 76.142 kb on - strandat 76.221 kb on + strandat 76.241 kb on - strandat 76.395 kb on + strand, within GFF4836at 76.395 kb on + strand, within GFF4836at 76.396 kb on - strand, within GFF4836at 76.396 kb on - strand, within GFF4836at 76.396 kb on - strand, within GFF4836at 76.425 kb on - strand, within GFF4836at 76.470 kb on + strand, within GFF4836at 76.470 kb on + strand, within GFF4836at 76.471 kb on - strand, within GFF4836at 76.471 kb on - strand, within GFF4836at 76.471 kb on - strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.539 kb on + strand, within GFF4836at 76.672 kb on - strand, within GFF4836at 76.672 kb on - strand, within GFF4836at 76.875 kb on + strand, within GFF4836at 76.875 kb on + strand, within GFF4836at 76.876 kb on - strand, within GFF4836at 77.058 kb on + strand, within GFF4836at 77.058 kb on + strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.059 kb on - strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.109 kb on + strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.110 kb on - strand, within GFF4836at 77.223 kb on - strand, within GFF4836at 77.223 kb on - strand, within GFF4836at 77.235 kb on + strand, within GFF4836at 77.236 kb on - strand, within GFF4836at 77.236 kb on - strand, within GFF4836at 77.240 kb on + strand, within GFF4836at 77.240 kb on + strand, within GFF4836at 77.241 kb on - strand, within GFF4836at 77.241 kb on - strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.335 kb on + strand, within GFF4836at 77.336 kb on - strand, within GFF4836at 77.336 kb on - strand, within GFF4836at 77.353 kb on - strand, within GFF4836at 77.353 kb on - strand, within GFF4836at 77.379 kb on + strand, within GFF4836at 77.379 kb on + strand, within GFF4836at 77.380 kb on - strand, within GFF4836at 77.535 kb on + strandat 77.535 kb on + strandat 77.536 kb on - strandat 77.671 kb on + strandat 77.671 kb on + strandat 77.672 kb on - strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.673 kb on + strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.674 kb on - strandat 77.680 kb on - strandat 77.680 kb on - strandat 77.923 kb on + strand, within GFF4837at 77.968 kb on + strand, within GFF4837at 77.968 kb on + strand, within GFF4837at 77.969 kb on - strand, within GFF4837at 77.969 kb on - strand, within GFF4837at 78.043 kb on + strand, within GFF4837at 78.179 kb on + strand, within GFF4837at 78.180 kb on - strand, within GFF4837at 78.180 kb on - strand, within GFF4837at 78.252 kb on + strandat 78.316 kb on + strandat 78.316 kb on + strandat 78.397 kb on + strandat 78.397 kb on + strandat 78.397 kb on + strandat 78.398 kb on - strandat 78.398 kb on - strandat 78.398 kb on - strandat 78.497 kb on + strand, within GFF4838at 78.526 kb on + strand, within GFF4838at 78.527 kb on - strand, within GFF4838

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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75,335 + -0.3
75,335 + -0.3
75,336 - +0.1
75,336 - -1.0
75,517 - GFF4835 0.22 -0.2
75,517 - GFF4835 0.22 +0.1
75,747 + GFF4835 0.49 -2.8
75,758 - GFF4835 0.51 +0.5
75,918 + GFF4835 0.70 -0.1
76,020 + GFF4835 0.82 -0.7
76,021 - GFF4835 0.82 -0.4
76,021 - GFF4835 0.82 -0.1
76,027 + GFF4835 0.82 +0.1
76,027 + GFF4835 0.82 +0.6
76,027 + GFF4835 0.82 -0.3
76,028 - GFF4835 0.83 +0.5
76,028 - GFF4835 0.83 +0.1
76,053 + GFF4835 0.85 -0.6
76,053 + GFF4835 0.85 +1.9
76,054 - GFF4835 0.86 +0.2
76,142 - +0.2
76,221 + -0.3
76,241 - -0.1
76,395 + GFF4836 0.13 -0.3
76,395 + GFF4836 0.13 -0.8
76,396 - GFF4836 0.13 -0.6
76,396 - GFF4836 0.13 -0.1
76,396 - GFF4836 0.13 -0.1
76,425 - GFF4836 0.16 -1.0
76,470 + GFF4836 0.19 -0.0
76,470 + GFF4836 0.19 +0.0
76,471 - GFF4836 0.19 -1.9
76,471 - GFF4836 0.19 +0.2
76,471 - GFF4836 0.19 +0.7
76,539 + GFF4836 0.24 -0.2
76,539 + GFF4836 0.24 -0.1
76,539 + GFF4836 0.24 +0.3
76,539 + GFF4836 0.24 -0.4
76,539 + GFF4836 0.24 -0.1
76,672 - GFF4836 0.34 +0.4
76,672 - GFF4836 0.34 +0.4
76,875 + GFF4836 0.50 +0.3
76,875 + GFF4836 0.50 -0.2
76,876 - GFF4836 0.50 +1.0
77,058 + GFF4836 0.64 -0.3
77,058 + GFF4836 0.64 -0.3
77,059 - GFF4836 0.64 +0.3
77,059 - GFF4836 0.64 +0.3
77,059 - GFF4836 0.64 +0.4
77,109 + GFF4836 0.68 +0.3
77,109 + GFF4836 0.68 -0.4
77,109 + GFF4836 0.68 +0.6
77,109 + GFF4836 0.68 -0.1
77,109 + GFF4836 0.68 +0.9
77,109 + GFF4836 0.68 +0.5
77,109 + GFF4836 0.68 -0.2
77,110 - GFF4836 0.68 -0.4
77,110 - GFF4836 0.68 -3.1
77,110 - GFF4836 0.68 -0.2
77,110 - GFF4836 0.68 +0.6
77,110 - GFF4836 0.68 -0.2
77,110 - GFF4836 0.68 +0.7
77,223 - GFF4836 0.77 +1.7
77,223 - GFF4836 0.77 +0.3
77,235 + GFF4836 0.77 -1.2
77,236 - GFF4836 0.77 +0.9
77,236 - GFF4836 0.77 -0.4
77,240 + GFF4836 0.78 +0.2
77,240 + GFF4836 0.78 -0.3
77,241 - GFF4836 0.78 +1.0
77,241 - GFF4836 0.78 -0.0
77,335 + GFF4836 0.85 +0.9
77,335 + GFF4836 0.85 +0.3
77,335 + GFF4836 0.85 -0.6
77,335 + GFF4836 0.85 +0.6
77,335 + GFF4836 0.85 +1.3
77,335 + GFF4836 0.85 +0.0
77,336 - GFF4836 0.85 -1.2
77,336 - GFF4836 0.85 -0.0
77,353 - GFF4836 0.86 +0.4
77,353 - GFF4836 0.86 +0.8
77,379 + GFF4836 0.88 -0.1
77,379 + GFF4836 0.88 -0.7
77,380 - GFF4836 0.88 +0.4
77,535 + +1.9
77,535 + +0.9
77,536 - +0.5
77,671 + +0.3
77,671 + +0.3
77,672 - -0.7
77,673 + -0.1
77,673 + +0.2
77,673 + -0.2
77,673 + +0.8
77,673 + +0.7
77,673 + +0.7
77,673 + +0.4
77,674 - -0.0
77,674 - +0.5
77,674 - +0.3
77,674 - +1.0
77,674 - -0.3
77,680 - +1.6
77,680 - +1.1
77,923 + GFF4837 0.38 -0.1
77,968 + GFF4837 0.45 +0.3
77,968 + GFF4837 0.45 -0.6
77,969 - GFF4837 0.45 -0.5
77,969 - GFF4837 0.45 -0.5
78,043 + GFF4837 0.57 +0.0
78,179 + GFF4837 0.78 -0.2
78,180 - GFF4837 0.79 +0.6
78,180 - GFF4837 0.79 -0.3
78,252 + +0.7
78,316 + +0.6
78,316 + +0.5
78,397 + -1.5
78,397 + -0.0
78,397 + +0.6
78,398 - -0.3
78,398 - -2.2
78,398 - -0.0
78,497 + GFF4838 0.24 +0.7
78,526 + GFF4838 0.29 +0.1
78,527 - GFF4838 0.29 -0.1

Or see this region's nucleotide sequence