Strain Fitness in Xanthobacter sp. DMC5 around GFF4819

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4818 and GFF4819 are separated by 627 nucleotidesGFF4819 and GFF4820 are separated by 537 nucleotidesGFF4820 and GFF4821 are separated by 10 nucleotides GFF4818 - Butyryl-CoA:acetate CoA-transferase, at 58,434 to 59,687 GFF4818 GFF4819 - Tyrosine recombinase XerC, at 60,315 to 61,586 GFF4819 GFF4820 - hypothetical protein, at 62,124 to 62,234 GFF4820 GFF4821 - hypothetical protein, at 62,245 to 62,673 GFF4821 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1 2at 59.385 kb on + strand, within GFF4818at 59.385 kb on + strand, within GFF4818at 59.386 kb on - strand, within GFF4818at 59.387 kb on + strand, within GFF4818at 59.388 kb on - strand, within GFF4818at 59.507 kb on + strand, within GFF4818at 59.507 kb on + strand, within GFF4818at 59.508 kb on - strand, within GFF4818at 59.555 kb on + strand, within GFF4818at 59.556 kb on - strand, within GFF4818at 59.686 kb on - strandat 59.686 kb on - strandat 59.697 kb on - strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.841 kb on + strandat 59.842 kb on - strandat 59.864 kb on + strandat 59.948 kb on + strandat 59.949 kb on - strandat 60.004 kb on + strandat 60.005 kb on - strandat 60.005 kb on - strandat 60.009 kb on + strandat 60.026 kb on - strandat 60.026 kb on - strandat 60.068 kb on + strandat 60.069 kb on - strandat 60.124 kb on + strandat 60.124 kb on + strandat 60.124 kb on + strandat 60.125 kb on - strandat 60.125 kb on - strandat 60.129 kb on + strandat 60.129 kb on + strandat 60.129 kb on + strandat 60.129 kb on + strandat 60.130 kb on - strandat 60.130 kb on - strandat 60.133 kb on - strandat 60.230 kb on - strandat 60.263 kb on - strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.316 kb on + strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.317 kb on - strandat 60.366 kb on + strandat 60.367 kb on - strandat 60.367 kb on - strandat 60.430 kb on + strandat 60.430 kb on + strandat 60.431 kb on - strandat 60.477 kb on - strand, within GFF4819at 60.480 kb on + strand, within GFF4819at 60.480 kb on + strand, within GFF4819at 60.481 kb on - strand, within GFF4819at 60.507 kb on + strand, within GFF4819at 60.507 kb on + strand, within GFF4819at 60.508 kb on - strand, within GFF4819at 60.508 kb on - strand, within GFF4819at 60.533 kb on + strand, within GFF4819at 60.533 kb on + strand, within GFF4819at 60.533 kb on + strand, within GFF4819at 60.534 kb on - strand, within GFF4819at 60.534 kb on - strand, within GFF4819at 60.534 kb on - strand, within GFF4819at 60.615 kb on + strand, within GFF4819at 60.615 kb on + strand, within GFF4819at 60.615 kb on + strand, within GFF4819at 60.615 kb on + strand, within GFF4819at 60.690 kb on + strand, within GFF4819at 60.691 kb on - strand, within GFF4819at 60.691 kb on - strand, within GFF4819at 60.691 kb on - strand, within GFF4819at 60.691 kb on - strand, within GFF4819at 60.691 kb on - strand, within GFF4819at 60.692 kb on + strand, within GFF4819at 60.692 kb on + strand, within GFF4819at 60.692 kb on + strand, within GFF4819at 60.693 kb on - strand, within GFF4819at 60.693 kb on - strand, within GFF4819at 60.736 kb on + strand, within GFF4819at 60.736 kb on + strand, within GFF4819at 60.736 kb on + strand, within GFF4819at 60.736 kb on + strand, within GFF4819at 60.737 kb on - strand, within GFF4819at 60.859 kb on + strand, within GFF4819at 60.860 kb on - strand, within GFF4819at 60.860 kb on - strand, within GFF4819at 60.927 kb on + strand, within GFF4819at 60.928 kb on - strand, within GFF4819at 60.928 kb on - strand, within GFF4819at 60.928 kb on - strand, within GFF4819at 60.935 kb on + strand, within GFF4819at 60.936 kb on - strand, within GFF4819at 60.936 kb on - strand, within GFF4819at 60.968 kb on + strand, within GFF4819at 61.091 kb on + strand, within GFF4819at 61.091 kb on + strand, within GFF4819at 61.092 kb on - strand, within GFF4819at 61.092 kb on - strand, within GFF4819at 61.164 kb on + strand, within GFF4819at 61.165 kb on - strand, within GFF4819at 61.213 kb on - strand, within GFF4819at 61.213 kb on - strand, within GFF4819at 61.264 kb on + strand, within GFF4819at 61.264 kb on + strand, within GFF4819at 61.400 kb on - strand, within GFF4819at 61.611 kb on + strandat 61.611 kb on + strandat 61.612 kb on - strandat 61.612 kb on - strandat 61.612 kb on - strandat 61.694 kb on - strandat 61.694 kb on - strandat 61.706 kb on + strandat 61.707 kb on - strandat 61.902 kb on + strandat 61.938 kb on + strandat 62.166 kb on + strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.167 kb on - strand, within GFF4820at 62.200 kb on + strand, within GFF4820at 62.206 kb on + strand, within GFF4820at 62.206 kb on + strand, within GFF4820at 62.206 kb on + strand, within GFF4820at 62.207 kb on - strand, within GFF4820at 62.207 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.212 kb on - strand, within GFF4820at 62.220 kb on + strand, within GFF4820at 62.221 kb on - strand, within GFF4820at 62.270 kb on + strandat 62.312 kb on - strand, within GFF4821at 62.312 kb on - strand, within GFF4821at 62.413 kb on + strand, within GFF4821at 62.413 kb on + strand, within GFF4821at 62.413 kb on + strand, within GFF4821at 62.414 kb on - strand, within GFF4821at 62.414 kb on - strand, within GFF4821at 62.477 kb on - strand, within GFF4821

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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59,385 + GFF4818 0.76 -0.3
59,385 + GFF4818 0.76 +1.9
59,386 - GFF4818 0.76 +0.2
59,387 + GFF4818 0.76 -0.9
59,388 - GFF4818 0.76 +0.1
59,507 + GFF4818 0.86 +1.1
59,507 + GFF4818 0.86 +0.3
59,508 - GFF4818 0.86 +0.5
59,555 + GFF4818 0.89 +0.1
59,556 - GFF4818 0.89 +0.4
59,686 - +0.1
59,686 - -0.1
59,697 - -0.6
59,841 + +0.6
59,841 + +1.0
59,841 + -0.3
59,841 + -0.0
59,841 + +0.1
59,841 + +0.2
59,842 - -0.2
59,864 + -1.0
59,948 + +0.6
59,949 - -0.4
60,004 + -0.5
60,005 - -0.8
60,005 - -0.0
60,009 + +1.0
60,026 - -0.6
60,026 - -0.4
60,068 + +0.5
60,069 - -0.2
60,124 + -0.9
60,124 + -1.5
60,124 + -1.4
60,125 - -0.1
60,125 - -0.3
60,129 + +0.5
60,129 + +1.0
60,129 + -0.0
60,129 + +0.5
60,130 - -1.0
60,130 - -0.7
60,133 - -0.2
60,230 - +0.7
60,263 - +0.9
60,316 + -0.6
60,316 + +0.2
60,316 + -1.7
60,316 + -0.1
60,316 + +0.3
60,316 + +0.1
60,316 + -0.2
60,316 + -0.0
60,316 + +0.7
60,316 + -0.1
60,317 - +0.1
60,317 - +0.3
60,317 - -0.0
60,317 - -0.3
60,317 - +0.0
60,317 - -0.2
60,366 + -0.4
60,367 - +0.2
60,367 - -0.7
60,430 + -0.0
60,430 + -0.4
60,431 - +0.1
60,477 - GFF4819 0.13 -0.1
60,480 + GFF4819 0.13 -0.7
60,480 + GFF4819 0.13 -0.7
60,481 - GFF4819 0.13 -0.3
60,507 + GFF4819 0.15 -0.4
60,507 + GFF4819 0.15 -0.4
60,508 - GFF4819 0.15 -0.4
60,508 - GFF4819 0.15 -0.4
60,533 + GFF4819 0.17 +0.3
60,533 + GFF4819 0.17 +1.2
60,533 + GFF4819 0.17 -0.3
60,534 - GFF4819 0.17 +0.5
60,534 - GFF4819 0.17 +0.4
60,534 - GFF4819 0.17 -1.5
60,615 + GFF4819 0.24 -0.4
60,615 + GFF4819 0.24 -0.5
60,615 + GFF4819 0.24 -0.1
60,615 + GFF4819 0.24 -1.2
60,690 + GFF4819 0.29 -0.7
60,691 - GFF4819 0.30 -0.8
60,691 - GFF4819 0.30 -0.2
60,691 - GFF4819 0.30 +0.6
60,691 - GFF4819 0.30 +0.7
60,691 - GFF4819 0.30 +0.8
60,692 + GFF4819 0.30 +0.9
60,692 + GFF4819 0.30 -0.6
60,692 + GFF4819 0.30 +0.0
60,693 - GFF4819 0.30 +0.2
60,693 - GFF4819 0.30 +0.6
60,736 + GFF4819 0.33 +0.3
60,736 + GFF4819 0.33 -0.0
60,736 + GFF4819 0.33 +1.7
60,736 + GFF4819 0.33 -0.2
60,737 - GFF4819 0.33 +0.7
60,859 + GFF4819 0.43 +0.9
60,860 - GFF4819 0.43 +0.0
60,860 - GFF4819 0.43 +0.5
60,927 + GFF4819 0.48 +1.3
60,928 - GFF4819 0.48 -0.6
60,928 - GFF4819 0.48 -0.5
60,928 - GFF4819 0.48 -0.2
60,935 + GFF4819 0.49 -0.2
60,936 - GFF4819 0.49 +1.5
60,936 - GFF4819 0.49 +0.9
60,968 + GFF4819 0.51 +0.6
61,091 + GFF4819 0.61 +0.1
61,091 + GFF4819 0.61 -0.1
61,092 - GFF4819 0.61 -0.6
61,092 - GFF4819 0.61 -0.3
61,164 + GFF4819 0.67 +0.0
61,165 - GFF4819 0.67 -0.0
61,213 - GFF4819 0.71 +0.5
61,213 - GFF4819 0.71 -1.7
61,264 + GFF4819 0.75 +0.8
61,264 + GFF4819 0.75 +0.1
61,400 - GFF4819 0.85 -0.3
61,611 + -1.1
61,611 + +0.0
61,612 - -0.2
61,612 - +0.4
61,612 - -0.3
61,694 - -0.6
61,694 - +0.6
61,706 + +0.0
61,707 - +0.3
61,902 + -0.1
61,938 + -0.5
62,166 + GFF4820 0.38 -0.9
62,167 - GFF4820 0.39 +1.2
62,167 - GFF4820 0.39 +0.7
62,167 - GFF4820 0.39 +0.3
62,167 - GFF4820 0.39 +0.6
62,200 + GFF4820 0.68 +0.5
62,206 + GFF4820 0.74 +1.6
62,206 + GFF4820 0.74 +0.6
62,206 + GFF4820 0.74 -0.6
62,207 - GFF4820 0.75 +0.1
62,207 - GFF4820 0.75 +0.9
62,212 - GFF4820 0.79 -0.1
62,212 - GFF4820 0.79 -0.4
62,212 - GFF4820 0.79 +0.9
62,212 - GFF4820 0.79 +0.8
62,212 - GFF4820 0.79 +0.5
62,220 + GFF4820 0.86 -0.3
62,221 - GFF4820 0.87 -0.5
62,270 + +1.1
62,312 - GFF4821 0.16 +0.3
62,312 - GFF4821 0.16 -0.3
62,413 + GFF4821 0.39 -0.2
62,413 + GFF4821 0.39 -0.8
62,413 + GFF4821 0.39 +0.1
62,414 - GFF4821 0.39 -2.2
62,414 - GFF4821 0.39 +0.0
62,477 - GFF4821 0.54 +0.7

Or see this region's nucleotide sequence