Strain Fitness in Xanthobacter sp. DMC5 around GFF4816

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4815 and GFF4816 are separated by 2 nucleotidesGFF4816 and GFF4817 are separated by 27 nucleotides GFF4815 - Acyl-CoA dehydrogenase, at 55,123 to 56,280 GFF4815 GFF4816 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 56,283 to 57,203 GFF4816 GFF4817 - putative acetyl-CoA acyltransferase, at 57,231 to 58,427 GFF4817 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.304 kb on - strand, within GFF4815at 55.398 kb on + strand, within GFF4815at 55.398 kb on + strand, within GFF4815at 55.399 kb on - strand, within GFF4815at 55.399 kb on - strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.456 kb on + strand, within GFF4815at 55.457 kb on - strand, within GFF4815at 55.457 kb on - strand, within GFF4815at 55.570 kb on + strand, within GFF4815at 55.571 kb on - strand, within GFF4815at 55.571 kb on - strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.594 kb on + strand, within GFF4815at 55.595 kb on - strand, within GFF4815at 55.710 kb on + strand, within GFF4815at 55.710 kb on + strand, within GFF4815at 55.710 kb on + strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.711 kb on - strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.769 kb on + strand, within GFF4815at 55.770 kb on - strand, within GFF4815at 55.770 kb on - strand, within GFF4815at 55.967 kb on - strand, within GFF4815at 56.008 kb on + strand, within GFF4815at 56.009 kb on - strand, within GFF4815at 56.009 kb on - strand, within GFF4815at 56.050 kb on + strand, within GFF4815at 56.051 kb on - strand, within GFF4815at 56.051 kb on - strand, within GFF4815at 56.051 kb on - strand, within GFF4815at 56.095 kb on + strand, within GFF4815at 56.096 kb on - strand, within GFF4815at 56.096 kb on - strand, within GFF4815at 56.096 kb on - strand, within GFF4815at 56.162 kb on - strand, within GFF4815at 56.162 kb on - strand, within GFF4815at 56.173 kb on + strandat 56.174 kb on - strandat 56.191 kb on + strandat 56.192 kb on - strandat 56.192 kb on - strandat 56.192 kb on - strandat 56.192 kb on - strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.297 kb on + strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.298 kb on - strandat 56.664 kb on + strand, within GFF4816at 56.664 kb on + strand, within GFF4816at 56.664 kb on + strand, within GFF4816at 56.664 kb on + strand, within GFF4816at 56.782 kb on - strand, within GFF4816at 56.782 kb on - strand, within GFF4816at 56.838 kb on + strand, within GFF4816at 56.985 kb on + strand, within GFF4816at 56.985 kb on + strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 56.986 kb on - strand, within GFF4816at 57.013 kb on + strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.014 kb on - strand, within GFF4816at 57.029 kb on + strand, within GFF4816at 57.029 kb on + strand, within GFF4816at 57.226 kb on + strandat 57.227 kb on - strandat 57.399 kb on + strand, within GFF4817at 57.590 kb on + strand, within GFF4817at 57.591 kb on - strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.600 kb on + strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.601 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.649 kb on - strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.747 kb on + strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.748 kb on - strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.752 kb on + strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.753 kb on - strand, within GFF4817at 57.777 kb on + strand, within GFF4817at 57.777 kb on + strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817at 57.778 kb on - strand, within GFF4817

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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55,304 - GFF4815 0.16 +0.1
55,398 + GFF4815 0.24 -0.0
55,398 + GFF4815 0.24 -0.2
55,399 - GFF4815 0.24 -0.9
55,399 - GFF4815 0.24 -0.9
55,456 + GFF4815 0.29 -0.7
55,456 + GFF4815 0.29 +0.2
55,456 + GFF4815 0.29 -0.7
55,456 + GFF4815 0.29 +0.7
55,457 - GFF4815 0.29 +1.3
55,457 - GFF4815 0.29 -0.3
55,570 + GFF4815 0.39 +0.3
55,571 - GFF4815 0.39 +1.0
55,571 - GFF4815 0.39 +0.3
55,594 + GFF4815 0.41 -0.4
55,594 + GFF4815 0.41 +0.6
55,594 + GFF4815 0.41 +0.7
55,594 + GFF4815 0.41 -0.2
55,594 + GFF4815 0.41 +0.8
55,594 + GFF4815 0.41 -0.3
55,595 - GFF4815 0.41 +0.4
55,710 + GFF4815 0.51 -0.5
55,710 + GFF4815 0.51 +0.3
55,710 + GFF4815 0.51 -0.5
55,711 - GFF4815 0.51 +0.1
55,711 - GFF4815 0.51 +0.8
55,711 - GFF4815 0.51 +0.7
55,711 - GFF4815 0.51 +0.1
55,769 + GFF4815 0.56 -0.3
55,769 + GFF4815 0.56 +0.8
55,769 + GFF4815 0.56 +1.3
55,769 + GFF4815 0.56 -0.5
55,769 + GFF4815 0.56 +0.4
55,770 - GFF4815 0.56 -0.4
55,770 - GFF4815 0.56 -0.4
55,967 - GFF4815 0.73 +0.3
56,008 + GFF4815 0.76 -0.3
56,009 - GFF4815 0.77 +1.0
56,009 - GFF4815 0.77 +0.3
56,050 + GFF4815 0.80 -0.2
56,051 - GFF4815 0.80 -1.1
56,051 - GFF4815 0.80 +0.5
56,051 - GFF4815 0.80 -0.6
56,095 + GFF4815 0.84 -0.3
56,096 - GFF4815 0.84 -0.9
56,096 - GFF4815 0.84 +0.7
56,096 - GFF4815 0.84 +0.3
56,162 - GFF4815 0.90 +0.6
56,162 - GFF4815 0.90 -0.2
56,173 + +1.1
56,174 - +0.2
56,191 + -0.0
56,192 - +0.4
56,192 - +0.1
56,192 - +0.1
56,192 - +0.5
56,297 + +0.1
56,297 + +1.6
56,297 + +0.0
56,297 + +0.4
56,297 + -0.5
56,297 + -0.2
56,297 + -0.4
56,297 + +0.5
56,298 - +1.1
56,298 - +0.1
56,298 - -0.3
56,298 - -1.3
56,298 - -0.3
56,298 - +0.2
56,298 - +0.3
56,298 - -0.6
56,664 + GFF4816 0.41 +0.1
56,664 + GFF4816 0.41 -0.6
56,664 + GFF4816 0.41 -1.1
56,664 + GFF4816 0.41 +0.1
56,782 - GFF4816 0.54 -1.3
56,782 - GFF4816 0.54 +0.3
56,838 + GFF4816 0.60 -0.9
56,985 + GFF4816 0.76 +2.0
56,985 + GFF4816 0.76 -1.7
56,986 - GFF4816 0.76 -0.6
56,986 - GFF4816 0.76 +0.1
56,986 - GFF4816 0.76 -1.3
56,986 - GFF4816 0.76 +1.1
56,986 - GFF4816 0.76 +0.0
56,986 - GFF4816 0.76 +0.2
56,986 - GFF4816 0.76 -0.3
56,986 - GFF4816 0.76 -0.3
56,986 - GFF4816 0.76 -1.4
57,013 + GFF4816 0.79 -0.2
57,014 - GFF4816 0.79 -0.0
57,014 - GFF4816 0.79 -0.1
57,014 - GFF4816 0.79 -1.1
57,014 - GFF4816 0.79 -0.2
57,014 - GFF4816 0.79 +0.2
57,029 + GFF4816 0.81 +0.1
57,029 + GFF4816 0.81 -0.2
57,226 + +0.6
57,227 - +0.4
57,399 + GFF4817 0.14 -0.6
57,590 + GFF4817 0.30 -0.1
57,591 - GFF4817 0.30 +0.3
57,600 + GFF4817 0.31 +0.0
57,600 + GFF4817 0.31 +0.5
57,600 + GFF4817 0.31 -0.7
57,601 - GFF4817 0.31 +0.7
57,601 - GFF4817 0.31 -0.4
57,601 - GFF4817 0.31 -0.9
57,601 - GFF4817 0.31 -0.3
57,601 - GFF4817 0.31 +0.3
57,649 - GFF4817 0.35 -0.4
57,649 - GFF4817 0.35 +0.2
57,649 - GFF4817 0.35 -2.0
57,649 - GFF4817 0.35 +1.5
57,649 - GFF4817 0.35 -0.1
57,747 + GFF4817 0.43 -1.0
57,747 + GFF4817 0.43 +0.1
57,747 + GFF4817 0.43 -0.8
57,748 - GFF4817 0.43 +0.3
57,748 - GFF4817 0.43 +0.5
57,748 - GFF4817 0.43 -0.4
57,752 + GFF4817 0.44 +0.1
57,752 + GFF4817 0.44 -1.4
57,752 + GFF4817 0.44 +0.9
57,752 + GFF4817 0.44 -0.2
57,752 + GFF4817 0.44 -0.1
57,752 + GFF4817 0.44 +1.1
57,753 - GFF4817 0.44 +0.3
57,753 - GFF4817 0.44 -1.9
57,753 - GFF4817 0.44 +0.1
57,753 - GFF4817 0.44 +1.4
57,753 - GFF4817 0.44 +1.3
57,753 - GFF4817 0.44 -0.1
57,777 + GFF4817 0.46 -1.7
57,777 + GFF4817 0.46 +0.2
57,778 - GFF4817 0.46 +0.3
57,778 - GFF4817 0.46 +0.3
57,778 - GFF4817 0.46 +2.1
57,778 - GFF4817 0.46 +0.2

Or see this region's nucleotide sequence