Strain Fitness in Xanthobacter sp. DMC5 around GFF4812

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4811 and GFF4812 are separated by 109 nucleotidesGFF4812 and GFF4813 overlap by 1 nucleotidesGFF4813 and GFF4814 are separated by 58 nucleotidesGFF4814 and GFF4815 overlap by 4 nucleotides GFF4811 - Succinyl-CoA--L-malate CoA-transferase beta subunit, at 52,039 to 53,286 GFF4811 GFF4812 - HTH-type transcriptional repressor AllR, at 53,396 to 54,244 GFF4812 GFF4813 - hypothetical protein, at 54,244 to 54,639 GFF4813 GFF4814 - hypothetical protein, at 54,698 to 55,126 GFF4814 GFF4815 - Acyl-CoA dehydrogenase, at 55,123 to 56,280 GFF4815 Position (kb) 53 54 55Strain fitness (log2 ratio) -1 0 1at 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.407 kb on + strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.408 kb on - strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.611 kb on + strand, within GFF4811at 52.727 kb on + strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.728 kb on - strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.736 kb on + strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.737 kb on - strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.875 kb on + strand, within GFF4811at 52.876 kb on - strand, within GFF4811at 52.876 kb on - strand, within GFF4811at 52.878 kb on + strand, within GFF4811at 52.879 kb on - strand, within GFF4811at 52.879 kb on - strand, within GFF4811at 52.907 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.054 kb on + strand, within GFF4811at 53.055 kb on - strand, within GFF4811at 53.055 kb on - strand, within GFF4811at 53.055 kb on - strand, within GFF4811at 53.181 kb on + strandat 53.183 kb on + strandat 53.467 kb on - strandat 53.472 kb on - strandat 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.609 kb on + strand, within GFF4812at 53.610 kb on - strand, within GFF4812at 53.617 kb on - strand, within GFF4812at 53.617 kb on - strand, within GFF4812at 53.629 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.853 kb on - strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.952 kb on + strand, within GFF4812at 53.953 kb on - strand, within GFF4812at 53.975 kb on + strand, within GFF4812at 54.254 kb on + strandat 54.254 kb on + strandat 54.254 kb on + strandat 54.255 kb on - strandat 54.255 kb on - strandat 54.355 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.418 kb on + strand, within GFF4813at 54.419 kb on - strand, within GFF4813at 54.419 kb on - strand, within GFF4813at 54.419 kb on - strand, within GFF4813at 54.638 kb on - strandat 54.638 kb on - strandat 54.780 kb on - strand, within GFF4814at 54.969 kb on + strand, within GFF4814at 55.022 kb on + strand, within GFF4814at 55.022 kb on + strand, within GFF4814at 55.041 kb on + strand, within GFF4814at 55.122 kb on + strandat 55.122 kb on + strandat 55.122 kb on + strandat 55.122 kb on + strandat 55.122 kb on + strandat 55.123 kb on - strandat 55.123 kb on - strandat 55.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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52,407 + GFF4811 0.29 +0.0
52,407 + GFF4811 0.29 -0.1
52,407 + GFF4811 0.29 +1.0
52,407 + GFF4811 0.29 +0.4
52,408 - GFF4811 0.30 -0.4
52,408 - GFF4811 0.30 +1.3
52,408 - GFF4811 0.30 +0.2
52,408 - GFF4811 0.30 +0.3
52,611 + GFF4811 0.46 +0.6
52,611 + GFF4811 0.46 -0.3
52,611 + GFF4811 0.46 +1.1
52,611 + GFF4811 0.46 +1.4
52,727 + GFF4811 0.55 -0.7
52,728 - GFF4811 0.55 -1.1
52,728 - GFF4811 0.55 +0.2
52,728 - GFF4811 0.55 +0.4
52,728 - GFF4811 0.55 +0.2
52,736 + GFF4811 0.56 +0.3
52,736 + GFF4811 0.56 -1.2
52,736 + GFF4811 0.56 +0.6
52,736 + GFF4811 0.56 -1.2
52,736 + GFF4811 0.56 -0.2
52,737 - GFF4811 0.56 -0.1
52,737 - GFF4811 0.56 +0.7
52,737 - GFF4811 0.56 +0.1
52,737 - GFF4811 0.56 -0.2
52,737 - GFF4811 0.56 +1.1
52,737 - GFF4811 0.56 +0.8
52,875 + GFF4811 0.67 -1.3
52,875 + GFF4811 0.67 -0.7
52,875 + GFF4811 0.67 +1.4
52,876 - GFF4811 0.67 +0.9
52,876 - GFF4811 0.67 +0.5
52,878 + GFF4811 0.67 -0.0
52,879 - GFF4811 0.67 -0.1
52,879 - GFF4811 0.67 +0.0
52,907 + GFF4811 0.70 -0.0
53,054 + GFF4811 0.81 +0.1
53,054 + GFF4811 0.81 -0.1
53,054 + GFF4811 0.81 +0.3
53,054 + GFF4811 0.81 -0.3
53,054 + GFF4811 0.81 +0.1
53,054 + GFF4811 0.81 +0.6
53,055 - GFF4811 0.81 -0.5
53,055 - GFF4811 0.81 -0.5
53,055 - GFF4811 0.81 +0.5
53,181 + -0.1
53,183 + +0.5
53,467 - -1.4
53,472 - -0.7
53,609 + GFF4812 0.25 +0.1
53,609 + GFF4812 0.25 -0.7
53,609 + GFF4812 0.25 -0.6
53,609 + GFF4812 0.25 -0.3
53,609 + GFF4812 0.25 +0.4
53,610 - GFF4812 0.25 -0.7
53,617 - GFF4812 0.26 +0.1
53,617 - GFF4812 0.26 -0.7
53,629 - GFF4812 0.27 -1.0
53,853 - GFF4812 0.54 -0.6
53,853 - GFF4812 0.54 +0.4
53,853 - GFF4812 0.54 -0.0
53,952 + GFF4812 0.65 -0.8
53,952 + GFF4812 0.65 -0.7
53,952 + GFF4812 0.65 -0.5
53,952 + GFF4812 0.65 -1.4
53,952 + GFF4812 0.65 +0.1
53,953 - GFF4812 0.66 -0.0
53,975 + GFF4812 0.68 -0.6
54,254 + +0.3
54,254 + +0.1
54,254 + +0.2
54,255 - +0.1
54,255 - +1.6
54,355 + GFF4813 0.28 -0.1
54,418 + GFF4813 0.44 -0.9
54,418 + GFF4813 0.44 -0.9
54,418 + GFF4813 0.44 -0.1
54,418 + GFF4813 0.44 +0.4
54,419 - GFF4813 0.44 -0.4
54,419 - GFF4813 0.44 -0.2
54,419 - GFF4813 0.44 -0.2
54,638 - -0.0
54,638 - -0.6
54,780 - GFF4814 0.19 -0.2
54,969 + GFF4814 0.63 -0.5
55,022 + GFF4814 0.76 -0.6
55,022 + GFF4814 0.76 -0.3
55,041 + GFF4814 0.80 +0.1
55,122 + -0.4
55,122 + -1.4
55,122 + -0.1
55,122 + -0.4
55,122 + +0.1
55,123 - +0.3
55,123 - -1.0
55,123 - +1.1

Or see this region's nucleotide sequence