Strain Fitness in Xanthobacter sp. DMC5 around GFF4807

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4805 and GFF4806 are separated by 2 nucleotidesGFF4806 and GFF4807 overlap by 11 nucleotidesGFF4807 and GFF4808 are separated by 1 nucleotidesGFF4808 and GFF4809 overlap by 8 nucleotides GFF4805 - Acetyl-coenzyme A synthetase, at 45,486 to 47,414 GFF4805 GFF4806 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 47,417 to 48,148 GFF4806 GFF4807 - Lipopolysaccharide export system ATP-binding protein LptB, at 48,138 to 48,878 GFF4807 GFF4808 - hypothetical protein, at 48,880 to 49,803 GFF4808 GFF4809 - High-affinity branched-chain amino acid transport system permease protein LivH, at 49,796 to 50,671 GFF4809 Position (kb) 48 49Strain fitness (log2 ratio) -1 0 1 2 3at 47.218 kb on + strand, within GFF4805at 47.228 kb on - strandat 47.254 kb on - strandat 47.257 kb on + strandat 47.275 kb on + strandat 47.276 kb on - strandat 47.276 kb on - strandat 47.305 kb on + strandat 47.306 kb on - strandat 47.306 kb on - strandat 47.306 kb on - strandat 47.325 kb on + strandat 47.325 kb on + strandat 47.326 kb on - strandat 47.371 kb on + strandat 47.371 kb on + strandat 47.371 kb on + strandat 47.372 kb on - strandat 47.393 kb on + strandat 47.393 kb on + strandat 47.393 kb on + strandat 47.394 kb on - strandat 47.394 kb on - strandat 47.420 kb on + strandat 47.431 kb on - strandat 47.508 kb on + strand, within GFF4806at 47.508 kb on + strand, within GFF4806at 47.508 kb on + strand, within GFF4806at 47.509 kb on - strand, within GFF4806at 47.509 kb on - strand, within GFF4806at 47.722 kb on + strand, within GFF4806at 47.747 kb on + strand, within GFF4806at 47.992 kb on + strand, within GFF4806at 47.992 kb on + strand, within GFF4806at 47.992 kb on + strand, within GFF4806at 47.992 kb on + strand, within GFF4806at 47.993 kb on - strand, within GFF4806at 47.993 kb on - strand, within GFF4806at 47.993 kb on - strand, within GFF4806at 48.091 kb on - strandat 48.163 kb on + strandat 48.163 kb on + strandat 48.163 kb on + strandat 48.163 kb on + strandat 48.164 kb on - strandat 48.164 kb on - strandat 48.164 kb on - strandat 48.164 kb on - strandat 48.478 kb on + strand, within GFF4807at 48.478 kb on + strand, within GFF4807at 48.479 kb on - strand, within GFF4807at 48.569 kb on + strand, within GFF4807at 48.569 kb on + strand, within GFF4807at 48.569 kb on + strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.570 kb on - strand, within GFF4807at 48.706 kb on + strand, within GFF4807at 48.706 kb on + strand, within GFF4807at 48.918 kb on - strandat 48.984 kb on + strand, within GFF4808at 48.984 kb on + strand, within GFF4808at 48.984 kb on + strand, within GFF4808at 48.985 kb on - strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.013 kb on + strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.014 kb on - strand, within GFF4808at 49.088 kb on + strand, within GFF4808at 49.088 kb on + strand, within GFF4808at 49.089 kb on - strand, within GFF4808at 49.224 kb on + strand, within GFF4808at 49.307 kb on + strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.308 kb on - strand, within GFF4808at 49.431 kb on - strand, within GFF4808at 49.478 kb on + strand, within GFF4808at 49.478 kb on + strand, within GFF4808at 49.505 kb on + strand, within GFF4808at 49.505 kb on + strand, within GFF4808at 49.555 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.605 kb on - strand, within GFF4808at 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.724 kb on + strandat 49.725 kb on - strandat 49.725 kb on - strandat 49.725 kb on - strandat 49.781 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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47,218 + GFF4805 0.90 +1.0
47,228 - +0.1
47,254 - +0.4
47,257 + +0.4
47,275 + -0.4
47,276 - +0.4
47,276 - +0.2
47,305 + -0.6
47,306 - -0.2
47,306 - +1.9
47,306 - +0.7
47,325 + +0.6
47,325 + +0.9
47,326 - -1.0
47,371 + +0.4
47,371 + -0.0
47,371 + -0.1
47,372 - -1.2
47,393 + +0.5
47,393 + +0.6
47,393 + -0.1
47,394 - -0.2
47,394 - -0.3
47,420 + -1.0
47,431 - -0.0
47,508 + GFF4806 0.12 -0.5
47,508 + GFF4806 0.12 +0.9
47,508 + GFF4806 0.12 +1.1
47,509 - GFF4806 0.13 +0.8
47,509 - GFF4806 0.13 +0.5
47,722 + GFF4806 0.42 +0.1
47,747 + GFF4806 0.45 -0.1
47,992 + GFF4806 0.79 -0.1
47,992 + GFF4806 0.79 -0.3
47,992 + GFF4806 0.79 -0.3
47,992 + GFF4806 0.79 +0.2
47,993 - GFF4806 0.79 -0.2
47,993 - GFF4806 0.79 +0.9
47,993 - GFF4806 0.79 +0.3
48,091 - -0.3
48,163 + -0.8
48,163 + -0.1
48,163 + +0.1
48,163 + +0.6
48,164 - -0.1
48,164 - +0.4
48,164 - -0.8
48,164 - +0.2
48,478 + GFF4807 0.46 +0.1
48,478 + GFF4807 0.46 +0.3
48,479 - GFF4807 0.46 -0.2
48,569 + GFF4807 0.58 -0.8
48,569 + GFF4807 0.58 -0.2
48,569 + GFF4807 0.58 +0.1
48,570 - GFF4807 0.58 -0.4
48,570 - GFF4807 0.58 +0.1
48,570 - GFF4807 0.58 -0.1
48,570 - GFF4807 0.58 -0.1
48,570 - GFF4807 0.58 -0.4
48,706 + GFF4807 0.77 +0.1
48,706 + GFF4807 0.77 -0.2
48,918 - -0.7
48,984 + GFF4808 0.11 -0.7
48,984 + GFF4808 0.11 -0.3
48,984 + GFF4808 0.11 -0.4
48,985 - GFF4808 0.11 +0.3
49,013 + GFF4808 0.14 -0.0
49,013 + GFF4808 0.14 +0.9
49,013 + GFF4808 0.14 +0.8
49,013 + GFF4808 0.14 +0.8
49,014 - GFF4808 0.15 +0.6
49,014 - GFF4808 0.15 +3.2
49,014 - GFF4808 0.15 +0.5
49,014 - GFF4808 0.15 -0.1
49,014 - GFF4808 0.15 +0.5
49,014 - GFF4808 0.15 -0.4
49,014 - GFF4808 0.15 -0.3
49,014 - GFF4808 0.15 +0.1
49,088 + GFF4808 0.23 -0.3
49,088 + GFF4808 0.23 -0.4
49,089 - GFF4808 0.23 -0.2
49,224 + GFF4808 0.37 -0.7
49,307 + GFF4808 0.46 -0.9
49,308 - GFF4808 0.46 +0.8
49,308 - GFF4808 0.46 -0.6
49,308 - GFF4808 0.46 +1.3
49,431 - GFF4808 0.60 +1.1
49,478 + GFF4808 0.65 +1.1
49,478 + GFF4808 0.65 -0.2
49,505 + GFF4808 0.68 -1.2
49,505 + GFF4808 0.68 +0.1
49,555 - GFF4808 0.73 -0.2
49,605 - GFF4808 0.78 +0.5
49,605 - GFF4808 0.78 -0.5
49,605 - GFF4808 0.78 +0.3
49,724 + +0.6
49,724 + +0.5
49,724 + -0.0
49,724 + -0.3
49,724 + +0.8
49,725 - +0.1
49,725 - +0.8
49,725 - +0.2
49,781 + -0.0

Or see this region's nucleotide sequence