Strain Fitness in Xanthobacter sp. DMC5 around GFF4804

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4802 and GFF4803 are separated by 1 nucleotidesGFF4803 and GFF4804 are separated by 25 nucleotidesGFF4804 and GFF4805 are separated by 102 nucleotides GFF4802 - Metal reductase, at 41,731 to 43,764 GFF4802 GFF4803 - Short-chain-enoyl-CoA hydratase, at 43,766 to 44,578 GFF4803 GFF4804 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 44,604 to 45,383 GFF4804 GFF4805 - Acetyl-coenzyme A synthetase, at 45,486 to 47,414 GFF4805 Position (kb) 44 45 46Strain fitness (log2 ratio) -1 0 1at 43.626 kb on - strandat 43.695 kb on + strandat 43.696 kb on - strandat 43.748 kb on + strandat 43.748 kb on + strandat 43.748 kb on + strandat 43.749 kb on - strandat 43.820 kb on + strandat 43.964 kb on + strand, within GFF4803at 43.964 kb on + strand, within GFF4803at 43.964 kb on + strand, within GFF4803at 43.965 kb on - strand, within GFF4803at 43.965 kb on - strand, within GFF4803at 44.076 kb on + strand, within GFF4803at 44.076 kb on + strand, within GFF4803at 44.077 kb on - strand, within GFF4803at 44.077 kb on - strand, within GFF4803at 44.283 kb on + strand, within GFF4803at 44.283 kb on + strand, within GFF4803at 44.284 kb on - strand, within GFF4803at 44.348 kb on + strand, within GFF4803at 44.348 kb on + strand, within GFF4803at 44.349 kb on - strand, within GFF4803at 44.349 kb on - strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.447 kb on + strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.448 kb on - strand, within GFF4803at 44.562 kb on + strandat 44.563 kb on - strandat 44.563 kb on - strandat 44.662 kb on + strandat 44.662 kb on + strandat 44.663 kb on - strandat 44.663 kb on - strandat 44.738 kb on - strand, within GFF4804at 44.756 kb on + strand, within GFF4804at 44.756 kb on + strand, within GFF4804at 44.757 kb on - strand, within GFF4804at 44.758 kb on + strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.759 kb on - strand, within GFF4804at 44.804 kb on + strand, within GFF4804at 44.804 kb on + strand, within GFF4804at 44.895 kb on - strand, within GFF4804at 44.935 kb on + strand, within GFF4804at 45.014 kb on - strand, within GFF4804at 45.014 kb on - strand, within GFF4804at 45.038 kb on - strand, within GFF4804at 45.348 kb on - strandat 45.348 kb on - strandat 45.385 kb on + strandat 45.386 kb on - strandat 45.386 kb on - strandat 45.503 kb on + strandat 45.503 kb on + strandat 45.503 kb on + strandat 45.503 kb on + strandat 45.504 kb on - strandat 45.504 kb on - strandat 45.571 kb on + strandat 45.571 kb on + strandat 45.603 kb on - strandat 45.603 kb on - strandat 45.603 kb on - strandat 45.604 kb on - strandat 45.608 kb on + strandat 45.608 kb on + strandat 45.608 kb on + strandat 45.608 kb on + strandat 45.609 kb on - strandat 45.609 kb on - strandat 45.630 kb on + strandat 45.630 kb on + strandat 45.915 kb on + strand, within GFF4805at 45.916 kb on - strand, within GFF4805at 45.955 kb on + strand, within GFF4805at 45.955 kb on + strand, within GFF4805at 45.968 kb on - strand, within GFF4805at 45.968 kb on - strand, within GFF4805at 46.177 kb on + strand, within GFF4805at 46.178 kb on - strand, within GFF4805at 46.178 kb on - strand, within GFF4805at 46.227 kb on + strand, within GFF4805

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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43,626 - +1.0
43,695 + +0.0
43,696 - -1.5
43,748 + -0.6
43,748 + -0.4
43,748 + -0.3
43,749 - +0.2
43,820 + -0.4
43,964 + GFF4803 0.24 +0.4
43,964 + GFF4803 0.24 +0.7
43,964 + GFF4803 0.24 +0.3
43,965 - GFF4803 0.24 -0.0
43,965 - GFF4803 0.24 -0.4
44,076 + GFF4803 0.38 +0.6
44,076 + GFF4803 0.38 +0.2
44,077 - GFF4803 0.38 -0.2
44,077 - GFF4803 0.38 -0.0
44,283 + GFF4803 0.64 +1.0
44,283 + GFF4803 0.64 -0.1
44,284 - GFF4803 0.64 +0.2
44,348 + GFF4803 0.72 +0.8
44,348 + GFF4803 0.72 +0.3
44,349 - GFF4803 0.72 +1.5
44,349 - GFF4803 0.72 +0.5
44,447 + GFF4803 0.84 +0.6
44,447 + GFF4803 0.84 -0.0
44,447 + GFF4803 0.84 -0.4
44,447 + GFF4803 0.84 +0.6
44,447 + GFF4803 0.84 +1.0
44,448 - GFF4803 0.84 -1.2
44,448 - GFF4803 0.84 +0.8
44,448 - GFF4803 0.84 +0.4
44,562 + -0.3
44,563 - -1.3
44,563 - +0.0
44,662 + -1.3
44,662 + +0.2
44,663 - -0.3
44,663 - +0.4
44,738 - GFF4804 0.17 -0.3
44,756 + GFF4804 0.19 +0.2
44,756 + GFF4804 0.19 -0.2
44,757 - GFF4804 0.20 +0.1
44,758 + GFF4804 0.20 +0.4
44,759 - GFF4804 0.20 -0.1
44,759 - GFF4804 0.20 +1.6
44,759 - GFF4804 0.20 -0.9
44,804 + GFF4804 0.26 -0.0
44,804 + GFF4804 0.26 +0.0
44,895 - GFF4804 0.37 -1.5
44,935 + GFF4804 0.42 -0.3
45,014 - GFF4804 0.53 +0.2
45,014 - GFF4804 0.53 +0.9
45,038 - GFF4804 0.56 -0.2
45,348 - -0.1
45,348 - -0.4
45,385 + +0.6
45,386 - +0.4
45,386 - -0.2
45,503 + -0.5
45,503 + -0.4
45,503 + -0.4
45,503 + +0.5
45,504 - -0.2
45,504 - -0.7
45,571 + +0.2
45,571 + -0.5
45,603 - -0.1
45,603 - +1.2
45,603 - +0.1
45,604 - +0.7
45,608 + -0.9
45,608 + +0.6
45,608 + +0.2
45,608 + +0.3
45,609 - +0.3
45,609 - -0.2
45,630 + +0.7
45,630 + +0.3
45,915 + GFF4805 0.22 +0.3
45,916 - GFF4805 0.22 -0.6
45,955 + GFF4805 0.24 +0.6
45,955 + GFF4805 0.24 +0.8
45,968 - GFF4805 0.25 -1.3
45,968 - GFF4805 0.25 +0.7
46,177 + GFF4805 0.36 -0.4
46,178 - GFF4805 0.36 -0.3
46,178 - GFF4805 0.36 -0.2
46,227 + GFF4805 0.38 +0.3

Or see this region's nucleotide sequence