Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF477 and GFF478 are separated by 231 nucleotides GFF478 and GFF479 are separated by 36 nucleotides
GFF477 - HTH-type transcriptional regulator HdfR, at 504,522 to 505,427
GFF477
GFF478 - hypothetical protein, at 505,659 to 505,901
GFF478
GFF479 - hypothetical protein, at 505,938 to 507,101
GFF479
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.534 kb on + strand at 503.535 kb on - strand at 503.564 kb on + strand at 503.748 kb on - strand at 503.748 kb on - strand at 503.748 kb on - strand at 503.748 kb on - strand at 504.369 kb on + strand at 504.369 kb on + strand at 504.369 kb on + strand at 504.369 kb on + strand at 504.369 kb on + strand at 504.370 kb on - strand at 504.370 kb on - strand at 504.370 kb on - strand at 504.370 kb on - strand at 504.448 kb on + strand at 504.448 kb on + strand at 504.491 kb on - strand at 504.534 kb on + strand at 504.534 kb on + strand at 504.535 kb on - strand at 504.535 kb on - strand at 504.535 kb on - strand at 504.691 kb on + strand, within GFF477 at 504.691 kb on + strand, within GFF477 at 504.692 kb on - strand, within GFF477 at 504.695 kb on + strand, within GFF477 at 504.766 kb on + strand, within GFF477 at 504.767 kb on - strand, within GFF477 at 504.804 kb on - strand, within GFF477 at 504.832 kb on - strand, within GFF477 at 504.862 kb on + strand, within GFF477 at 504.863 kb on - strand, within GFF477 at 504.999 kb on + strand, within GFF477 at 505.030 kb on - strand, within GFF477 at 505.092 kb on + strand, within GFF477 at 505.093 kb on - strand, within GFF477 at 505.093 kb on - strand, within GFF477 at 505.093 kb on - strand, within GFF477 at 505.095 kb on - strand, within GFF477 at 505.095 kb on - strand, within GFF477 at 505.128 kb on + strand, within GFF477 at 505.129 kb on - strand, within GFF477 at 505.129 kb on - strand, within GFF477 at 505.153 kb on + strand, within GFF477 at 505.153 kb on + strand, within GFF477 at 505.153 kb on + strand, within GFF477 at 505.154 kb on - strand, within GFF477 at 505.154 kb on - strand, within GFF477 at 505.154 kb on - strand, within GFF477 at 505.154 kb on - strand, within GFF477 at 505.154 kb on - strand, within GFF477 at 505.154 kb on - strand, within GFF477 at 505.234 kb on - strand, within GFF477 at 505.234 kb on - strand, within GFF477 at 505.419 kb on - strand at 505.627 kb on - strand at 505.939 kb on + strand at 505.940 kb on - strand at 506.104 kb on + strand, within GFF479 at 506.104 kb on + strand, within GFF479 at 506.104 kb on + strand, within GFF479 at 506.104 kb on + strand, within GFF479 at 506.105 kb on - strand, within GFF479 at 506.105 kb on - strand, within GFF479 at 506.105 kb on - strand, within GFF479 at 506.105 kb on - strand, within GFF479 at 506.197 kb on + strand, within GFF479 at 506.197 kb on + strand, within GFF479 at 506.198 kb on - strand, within GFF479 at 506.198 kb on - strand, within GFF479 at 506.198 kb on - strand, within GFF479
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 503,534 + -0.4 503,535 - +0.1 503,564 + +0.0 503,748 - +2.2 503,748 - +0.7 503,748 - +1.0 503,748 - -0.0 504,369 + -0.2 504,369 + +1.4 504,369 + -0.2 504,369 + +0.2 504,369 + -0.3 504,370 - +0.3 504,370 - -0.4 504,370 - -0.3 504,370 - -0.4 504,448 + -0.6 504,448 + +1.5 504,491 - -0.4 504,534 + -0.8 504,534 + -0.7 504,535 - -0.5 504,535 - +0.2 504,535 - -0.1 504,691 + GFF477 0.19 -0.3 504,691 + GFF477 0.19 -0.3 504,692 - GFF477 0.19 -1.0 504,695 + GFF477 0.19 -1.3 504,766 + GFF477 0.27 +0.7 504,767 - GFF477 0.27 +0.8 504,804 - GFF477 0.31 -0.3 504,832 - GFF477 0.34 +0.8 504,862 + GFF477 0.38 +0.2 504,863 - GFF477 0.38 +0.2 504,999 + GFF477 0.53 -1.0 505,030 - GFF477 0.56 -0.8 505,092 + GFF477 0.63 +0.5 505,093 - GFF477 0.63 -0.4 505,093 - GFF477 0.63 +0.9 505,093 - GFF477 0.63 -0.9 505,095 - GFF477 0.63 +0.8 505,095 - GFF477 0.63 -0.7 505,128 + GFF477 0.67 -0.0 505,129 - GFF477 0.67 +0.4 505,129 - GFF477 0.67 -1.8 505,153 + GFF477 0.70 +0.4 505,153 + GFF477 0.70 -0.4 505,153 + GFF477 0.70 +0.4 505,154 - GFF477 0.70 -0.5 505,154 - GFF477 0.70 -0.1 505,154 - GFF477 0.70 -1.1 505,154 - GFF477 0.70 -1.0 505,154 - GFF477 0.70 +0.2 505,154 - GFF477 0.70 -0.5 505,234 - GFF477 0.79 -0.4 505,234 - GFF477 0.79 +0.0 505,419 - +0.3 505,627 - +0.3 505,939 + -0.4 505,940 - +0.9 506,104 + GFF479 0.14 -0.3 506,104 + GFF479 0.14 +0.5 506,104 + GFF479 0.14 -0.1 506,104 + GFF479 0.14 +0.5 506,105 - GFF479 0.14 +0.0 506,105 - GFF479 0.14 -0.6 506,105 - GFF479 0.14 -0.4 506,105 - GFF479 0.14 -0.2 506,197 + GFF479 0.22 -1.8 506,197 + GFF479 0.22 +1.0 506,198 - GFF479 0.22 -1.1 506,198 - GFF479 0.22 +1.2 506,198 - GFF479 0.22 +0.5
Or see this region's nucleotide sequence