Strain Fitness in Xanthobacter sp. DMC5 around GFF4769

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4768 and GFF4769 are separated by 331 nucleotidesGFF4769 and GFF4770 are separated by 40 nucleotidesGFF4770 and GFF4771 are separated by 148 nucleotides GFF4768 - 2,4-dienoyl-CoA reductase, at 5,828 to 7,849 GFF4768 GFF4769 - putative enoyl-CoA hydratase echA8, at 8,181 to 8,963 GFF4769 GFF4770 - Transcriptional activatory protein BadR, at 9,004 to 9,480 GFF4770 GFF4771 - hypothetical protein, at 9,629 to 10,819 GFF4771 Position (kb) 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1at 7.206 kb on + strand, within GFF4768at 7.206 kb on + strand, within GFF4768at 7.206 kb on + strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.347 kb on + strand, within GFF4768at 7.347 kb on + strand, within GFF4768at 7.348 kb on - strand, within GFF4768at 7.348 kb on - strand, within GFF4768at 7.381 kb on - strand, within GFF4768at 7.525 kb on - strand, within GFF4768at 7.534 kb on + strand, within GFF4768at 7.534 kb on + strand, within GFF4768at 7.535 kb on - strand, within GFF4768at 7.535 kb on - strand, within GFF4768at 7.535 kb on - strand, within GFF4768at 7.620 kb on + strand, within GFF4768at 7.716 kb on + strandat 7.716 kb on + strandat 7.716 kb on + strandat 7.716 kb on + strandat 7.717 kb on - strandat 7.717 kb on - strandat 7.717 kb on - strandat 7.717 kb on - strandat 7.871 kb on + strandat 7.872 kb on - strandat 8.003 kb on + strandat 8.004 kb on - strandat 8.004 kb on - strandat 8.004 kb on - strandat 8.015 kb on + strandat 8.151 kb on + strandat 8.693 kb on + strand, within GFF4769at 8.938 kb on + strandat 8.961 kb on + strandat 8.961 kb on + strandat 8.961 kb on + strandat 8.962 kb on - strandat 8.962 kb on - strandat 8.962 kb on - strandat 9.006 kb on - strandat 9.104 kb on + strand, within GFF4770at 9.104 kb on + strand, within GFF4770at 9.104 kb on + strand, within GFF4770at 9.104 kb on + strand, within GFF4770at 9.105 kb on - strand, within GFF4770at 9.162 kb on + strand, within GFF4770at 9.190 kb on - strand, within GFF4770at 9.190 kb on - strand, within GFF4770at 9.308 kb on + strand, within GFF4770at 9.391 kb on - strand, within GFF4770at 9.391 kb on - strand, within GFF4770at 9.391 kb on - strand, within GFF4770at 9.391 kb on - strand, within GFF4770at 9.391 kb on - strand, within GFF4770at 9.394 kb on + strand, within GFF4770at 9.465 kb on + strandat 9.465 kb on + strandat 9.466 kb on - strandat 9.466 kb on - strandat 9.555 kb on - strandat 9.574 kb on + strandat 9.575 kb on - strandat 9.575 kb on - strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.699 kb on + strandat 9.700 kb on - strandat 9.700 kb on - strandat 9.888 kb on + strand, within GFF4771at 9.888 kb on + strand, within GFF4771at 9.889 kb on - strand, within GFF4771at 9.889 kb on - strand, within GFF4771at 9.906 kb on + strand, within GFF4771at 9.907 kb on - strand, within GFF4771

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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7,206 + GFF4768 0.68 +0.6
7,206 + GFF4768 0.68 +0.6
7,206 + GFF4768 0.68 -0.7
7,207 - GFF4768 0.68 -0.5
7,207 - GFF4768 0.68 -1.4
7,207 - GFF4768 0.68 +0.6
7,207 - GFF4768 0.68 -0.1
7,347 + GFF4768 0.75 -0.2
7,347 + GFF4768 0.75 +1.2
7,348 - GFF4768 0.75 -0.1
7,348 - GFF4768 0.75 +0.1
7,381 - GFF4768 0.77 +0.8
7,525 - GFF4768 0.84 +0.2
7,534 + GFF4768 0.84 +0.7
7,534 + GFF4768 0.84 +0.8
7,535 - GFF4768 0.84 -0.3
7,535 - GFF4768 0.84 +0.1
7,535 - GFF4768 0.84 -0.9
7,620 + GFF4768 0.89 +0.5
7,716 + +0.1
7,716 + +0.5
7,716 + +0.3
7,716 + -0.9
7,717 - +0.1
7,717 - -0.1
7,717 - +0.1
7,717 - -0.3
7,871 + -1.9
7,872 - -0.5
8,003 + -0.4
8,004 - -0.3
8,004 - +0.2
8,004 - -0.3
8,015 + -0.1
8,151 + +0.1
8,693 + GFF4769 0.65 -0.6
8,938 + -0.5
8,961 + -0.2
8,961 + +0.1
8,961 + +0.5
8,962 - -0.8
8,962 - +0.2
8,962 - -0.4
9,006 - -0.5
9,104 + GFF4770 0.21 +0.5
9,104 + GFF4770 0.21 -0.3
9,104 + GFF4770 0.21 -1.1
9,104 + GFF4770 0.21 +0.2
9,105 - GFF4770 0.21 -0.2
9,162 + GFF4770 0.33 -0.3
9,190 - GFF4770 0.39 -0.4
9,190 - GFF4770 0.39 -0.6
9,308 + GFF4770 0.64 -0.5
9,391 - GFF4770 0.81 +0.2
9,391 - GFF4770 0.81 +0.2
9,391 - GFF4770 0.81 -0.2
9,391 - GFF4770 0.81 +0.0
9,391 - GFF4770 0.81 -0.6
9,394 + GFF4770 0.82 +0.0
9,465 + +0.2
9,465 + +0.4
9,466 - +0.2
9,466 - +0.3
9,555 - +1.1
9,574 + -0.0
9,575 - +0.8
9,575 - -0.5
9,699 + -2.8
9,699 + -1.2
9,699 + -0.8
9,699 + +0.6
9,699 + -1.3
9,699 + -0.6
9,699 + -0.4
9,699 + +0.2
9,699 + -0.2
9,700 - +0.6
9,700 - -0.1
9,888 + GFF4771 0.22 -0.1
9,888 + GFF4771 0.22 -0.4
9,889 - GFF4771 0.22 -0.6
9,889 - GFF4771 0.22 -0.4
9,906 + GFF4771 0.23 -0.0
9,907 - GFF4771 0.23 +0.3

Or see this region's nucleotide sequence