Strain Fitness in Xanthobacter sp. DMC5 around GFF4758

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4757 and GFF4758 are separated by 2 nucleotidesGFF4758 and GFF4759 are separated by 133 nucleotides GFF4757 - hypothetical protein, at 169,985 to 171,031 GFF4757 GFF4758 - Vitamin B12 import ATP-binding protein BtuD, at 171,034 to 172,140 GFF4758 GFF4759 - HTH-type transcriptional regulator HdfR, at 172,274 to 173,221 GFF4759 Position (kb) 171 172 173Strain fitness (log2 ratio) -2 -1 0 1at 170.118 kb on + strand, within GFF4757at 170.205 kb on + strand, within GFF4757at 170.205 kb on + strand, within GFF4757at 170.205 kb on + strand, within GFF4757at 170.205 kb on + strand, within GFF4757at 170.205 kb on + strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.206 kb on - strand, within GFF4757at 170.211 kb on + strand, within GFF4757at 170.212 kb on - strand, within GFF4757at 170.212 kb on - strand, within GFF4757at 170.553 kb on + strand, within GFF4757at 170.553 kb on + strand, within GFF4757at 170.554 kb on - strand, within GFF4757at 170.554 kb on - strand, within GFF4757at 170.613 kb on + strand, within GFF4757at 170.614 kb on - strand, within GFF4757at 170.652 kb on + strand, within GFF4757at 170.709 kb on + strand, within GFF4757at 170.709 kb on + strand, within GFF4757at 170.709 kb on + strand, within GFF4757at 170.874 kb on + strand, within GFF4757at 170.875 kb on - strand, within GFF4757at 170.875 kb on - strand, within GFF4757at 170.875 kb on - strand, within GFF4757at 171.192 kb on - strand, within GFF4758at 171.461 kb on + strand, within GFF4758at 171.461 kb on + strand, within GFF4758at 171.462 kb on - strand, within GFF4758at 171.568 kb on - strand, within GFF4758at 171.833 kb on + strand, within GFF4758at 171.858 kb on + strand, within GFF4758at 171.858 kb on + strand, within GFF4758at 171.858 kb on + strand, within GFF4758at 171.858 kb on + strand, within GFF4758at 171.859 kb on - strand, within GFF4758at 171.875 kb on + strand, within GFF4758at 171.876 kb on - strand, within GFF4758at 171.876 kb on - strand, within GFF4758at 172.239 kb on - strandat 172.262 kb on - strandat 172.308 kb on - strandat 172.893 kb on - strand, within GFF4759at 172.991 kb on + strand, within GFF4759at 172.992 kb on - strand, within GFF4759

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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170,118 + GFF4757 0.13 +1.1
170,205 + GFF4757 0.21 +0.4
170,205 + GFF4757 0.21 -0.8
170,205 + GFF4757 0.21 +0.7
170,205 + GFF4757 0.21 -0.0
170,205 + GFF4757 0.21 -0.5
170,206 - GFF4757 0.21 +0.5
170,206 - GFF4757 0.21 +0.2
170,206 - GFF4757 0.21 +0.4
170,206 - GFF4757 0.21 +0.1
170,206 - GFF4757 0.21 -0.3
170,206 - GFF4757 0.21 -0.5
170,206 - GFF4757 0.21 -0.3
170,206 - GFF4757 0.21 -0.1
170,211 + GFF4757 0.22 +0.7
170,212 - GFF4757 0.22 +0.5
170,212 - GFF4757 0.22 +0.8
170,553 + GFF4757 0.54 -0.7
170,553 + GFF4757 0.54 +0.1
170,554 - GFF4757 0.54 -0.8
170,554 - GFF4757 0.54 +0.3
170,613 + GFF4757 0.60 +0.8
170,614 - GFF4757 0.60 +0.4
170,652 + GFF4757 0.64 +0.1
170,709 + GFF4757 0.69 -0.0
170,709 + GFF4757 0.69 +0.1
170,709 + GFF4757 0.69 -0.2
170,874 + GFF4757 0.85 +0.4
170,875 - GFF4757 0.85 -2.6
170,875 - GFF4757 0.85 -1.0
170,875 - GFF4757 0.85 +0.3
171,192 - GFF4758 0.14 +0.6
171,461 + GFF4758 0.39 -0.9
171,461 + GFF4758 0.39 +0.2
171,462 - GFF4758 0.39 -0.1
171,568 - GFF4758 0.48 -0.5
171,833 + GFF4758 0.72 +0.2
171,858 + GFF4758 0.74 -0.1
171,858 + GFF4758 0.74 +1.3
171,858 + GFF4758 0.74 -0.3
171,858 + GFF4758 0.74 -0.1
171,859 - GFF4758 0.75 +0.1
171,875 + GFF4758 0.76 -0.3
171,876 - GFF4758 0.76 +0.2
171,876 - GFF4758 0.76 +0.4
172,239 - +0.7
172,262 - +0.9
172,308 - -0.1
172,893 - GFF4759 0.65 +0.8
172,991 + GFF4759 0.76 -0.7
172,992 - GFF4759 0.76 +0.9

Or see this region's nucleotide sequence