Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4740 and GFF4741 are separated by 247 nucleotides GFF4741 and GFF4742 are separated by 214 nucleotides
GFF4740 - hypothetical protein, at 153,475 to 156,243
GFF4740
GFF4741 - hypothetical protein, at 156,491 to 157,183
GFF4741
GFF4742 - Hexuronate transporter, at 157,398 to 158,669
GFF4742
Position (kb) 156
157
158 Strain fitness (log2 ratio) -1
0
1 at 155.504 kb on + strand, within GFF4740 at 155.519 kb on + strand, within GFF4740 at 155.570 kb on + strand, within GFF4740 at 155.570 kb on + strand, within GFF4740 at 155.571 kb on - strand, within GFF4740 at 155.870 kb on + strand, within GFF4740 at 155.871 kb on - strand, within GFF4740 at 155.939 kb on + strand, within GFF4740 at 155.940 kb on - strand, within GFF4740 at 155.940 kb on - strand, within GFF4740 at 155.951 kb on + strand, within GFF4740 at 155.951 kb on + strand, within GFF4740 at 155.951 kb on + strand, within GFF4740 at 155.952 kb on - strand, within GFF4740 at 155.952 kb on - strand, within GFF4740 at 156.017 kb on + strand at 156.018 kb on - strand at 156.367 kb on + strand at 156.398 kb on + strand at 156.467 kb on + strand at 156.764 kb on + strand, within GFF4741 at 156.764 kb on + strand, within GFF4741 at 156.764 kb on + strand, within GFF4741 at 156.765 kb on + strand, within GFF4741 at 156.765 kb on - strand, within GFF4741 at 156.765 kb on - strand, within GFF4741 at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.461 kb on + strand at 157.462 kb on - strand at 157.486 kb on - strand at 157.541 kb on + strand, within GFF4742 at 157.609 kb on - strand, within GFF4742 at 157.609 kb on - strand, within GFF4742 at 157.698 kb on + strand, within GFF4742 at 157.699 kb on - strand, within GFF4742 at 157.699 kb on - strand, within GFF4742 at 157.807 kb on - strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.938 kb on + strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 157.939 kb on - strand, within GFF4742 at 158.100 kb on + strand, within GFF4742 at 158.124 kb on + strand, within GFF4742 at 158.136 kb on + strand, within GFF4742 at 158.160 kb on + strand, within GFF4742 at 158.160 kb on + strand, within GFF4742 at 158.161 kb on - strand, within GFF4742 at 158.176 kb on - strand, within GFF4742 at 158.176 kb on - strand, within GFF4742
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 155,504 + GFF4740 0.73 +0.1 155,519 + GFF4740 0.74 -0.3 155,570 + GFF4740 0.76 -0.1 155,570 + GFF4740 0.76 +0.1 155,571 - GFF4740 0.76 -0.8 155,870 + GFF4740 0.86 +0.4 155,871 - GFF4740 0.87 -1.0 155,939 + GFF4740 0.89 +0.5 155,940 - GFF4740 0.89 -1.2 155,940 - GFF4740 0.89 -0.6 155,951 + GFF4740 0.89 +0.0 155,951 + GFF4740 0.89 -0.3 155,951 + GFF4740 0.89 -0.4 155,952 - GFF4740 0.89 -0.1 155,952 - GFF4740 0.89 +0.0 156,017 + +0.4 156,018 - -0.1 156,367 + +0.9 156,398 + -1.6 156,467 + +1.6 156,764 + GFF4741 0.39 -0.7 156,764 + GFF4741 0.39 -0.8 156,764 + GFF4741 0.39 -0.8 156,765 + GFF4741 0.40 -1.1 156,765 - GFF4741 0.40 +0.3 156,765 - GFF4741 0.40 -0.1 157,461 + +0.0 157,461 + -0.7 157,461 + -0.3 157,461 + +0.5 157,461 + -0.2 157,461 + +0.1 157,462 - -0.0 157,486 - -0.2 157,541 + GFF4742 0.11 +0.4 157,609 - GFF4742 0.17 +0.5 157,609 - GFF4742 0.17 +0.8 157,698 + GFF4742 0.24 +0.4 157,699 - GFF4742 0.24 -0.5 157,699 - GFF4742 0.24 +0.8 157,807 - GFF4742 0.32 -0.2 157,938 + GFF4742 0.42 -1.1 157,938 + GFF4742 0.42 -0.2 157,938 + GFF4742 0.42 +0.1 157,939 - GFF4742 0.43 -1.3 157,939 - GFF4742 0.43 -0.5 157,939 - GFF4742 0.43 -0.1 158,100 + GFF4742 0.55 +0.3 158,124 + GFF4742 0.57 +0.5 158,136 + GFF4742 0.58 -1.3 158,160 + GFF4742 0.60 +0.2 158,160 + GFF4742 0.60 +1.2 158,161 - GFF4742 0.60 -0.2 158,176 - GFF4742 0.61 -0.7 158,176 - GFF4742 0.61 +0.2
Or see this region's nucleotide sequence