Strain Fitness in Xanthobacter sp. DMC5 around GFF4740

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4739 and GFF4740 are separated by 117 nucleotidesGFF4740 and GFF4741 are separated by 247 nucleotides GFF4739 - Respiratory nitrate reductase 1 alpha chain, at 149,614 to 153,357 GFF4739 GFF4740 - hypothetical protein, at 153,475 to 156,243 GFF4740 GFF4741 - hypothetical protein, at 156,491 to 157,183 GFF4741 Position (kb) 153 154 155 156 157Strain fitness (log2 ratio) -1 0 1 2at 152.507 kb on + strand, within GFF4739at 152.507 kb on + strand, within GFF4739at 152.507 kb on + strand, within GFF4739at 152.543 kb on + strand, within GFF4739at 152.544 kb on - strand, within GFF4739at 152.627 kb on + strand, within GFF4739at 152.627 kb on + strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.628 kb on - strand, within GFF4739at 152.699 kb on + strand, within GFF4739at 152.699 kb on + strand, within GFF4739at 152.700 kb on - strand, within GFF4739at 152.708 kb on + strand, within GFF4739at 152.708 kb on + strand, within GFF4739at 152.708 kb on + strand, within GFF4739at 152.709 kb on - strand, within GFF4739at 152.744 kb on + strand, within GFF4739at 152.745 kb on - strand, within GFF4739at 152.745 kb on - strand, within GFF4739at 152.763 kb on - strand, within GFF4739at 152.763 kb on - strand, within GFF4739at 152.763 kb on - strand, within GFF4739at 152.915 kb on + strand, within GFF4739at 152.915 kb on + strand, within GFF4739at 152.915 kb on + strand, within GFF4739at 152.916 kb on - strand, within GFF4739at 153.047 kb on + strandat 153.048 kb on - strandat 153.048 kb on - strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.053 kb on + strandat 153.054 kb on - strandat 153.054 kb on - strandat 153.054 kb on - strandat 153.062 kb on + strandat 153.125 kb on + strandat 153.125 kb on + strandat 153.126 kb on - strandat 153.170 kb on + strandat 153.170 kb on + strandat 153.170 kb on + strandat 153.170 kb on + strandat 153.171 kb on - strandat 153.171 kb on - strandat 153.171 kb on - strandat 153.557 kb on + strandat 153.557 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.590 kb on + strandat 153.591 kb on - strandat 153.654 kb on - strandat 153.977 kb on + strand, within GFF4740at 153.977 kb on + strand, within GFF4740at 154.044 kb on - strand, within GFF4740at 154.044 kb on - strand, within GFF4740at 154.103 kb on + strand, within GFF4740at 154.103 kb on + strand, within GFF4740at 154.103 kb on + strand, within GFF4740at 154.134 kb on - strand, within GFF4740at 154.541 kb on + strand, within GFF4740at 154.541 kb on + strand, within GFF4740at 154.542 kb on - strand, within GFF4740at 154.569 kb on - strand, within GFF4740at 155.092 kb on - strand, within GFF4740at 155.092 kb on - strand, within GFF4740at 155.189 kb on + strand, within GFF4740at 155.190 kb on - strand, within GFF4740at 155.192 kb on + strand, within GFF4740at 155.193 kb on - strand, within GFF4740at 155.193 kb on - strand, within GFF4740at 155.193 kb on - strand, within GFF4740at 155.193 kb on - strand, within GFF4740at 155.193 kb on - strand, within GFF4740at 155.210 kb on + strand, within GFF4740at 155.210 kb on + strand, within GFF4740at 155.327 kb on + strand, within GFF4740at 155.328 kb on - strand, within GFF4740at 155.328 kb on - strand, within GFF4740at 155.343 kb on - strand, within GFF4740at 155.387 kb on + strand, within GFF4740at 155.409 kb on - strand, within GFF4740at 155.432 kb on + strand, within GFF4740at 155.504 kb on + strand, within GFF4740at 155.519 kb on + strand, within GFF4740at 155.570 kb on + strand, within GFF4740at 155.570 kb on + strand, within GFF4740at 155.571 kb on - strand, within GFF4740at 155.870 kb on + strand, within GFF4740at 155.871 kb on - strand, within GFF4740at 155.939 kb on + strand, within GFF4740at 155.940 kb on - strand, within GFF4740at 155.940 kb on - strand, within GFF4740at 155.951 kb on + strand, within GFF4740at 155.951 kb on + strand, within GFF4740at 155.951 kb on + strand, within GFF4740at 155.952 kb on - strand, within GFF4740at 155.952 kb on - strand, within GFF4740at 156.017 kb on + strandat 156.018 kb on - strandat 156.367 kb on + strandat 156.398 kb on + strandat 156.467 kb on + strandat 156.764 kb on + strand, within GFF4741at 156.764 kb on + strand, within GFF4741at 156.764 kb on + strand, within GFF4741at 156.765 kb on + strand, within GFF4741at 156.765 kb on - strand, within GFF4741at 156.765 kb on - strand, within GFF4741

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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152,507 + GFF4739 0.77 +0.2
152,507 + GFF4739 0.77 -1.1
152,507 + GFF4739 0.77 +0.1
152,543 + GFF4739 0.78 +0.1
152,544 - GFF4739 0.78 +0.5
152,627 + GFF4739 0.80 +0.0
152,627 + GFF4739 0.80 -1.5
152,628 - GFF4739 0.81 -0.4
152,628 - GFF4739 0.81 +0.2
152,628 - GFF4739 0.81 -0.5
152,628 - GFF4739 0.81 -0.9
152,628 - GFF4739 0.81 -0.1
152,699 + GFF4739 0.82 -0.3
152,699 + GFF4739 0.82 +1.3
152,700 - GFF4739 0.82 +1.4
152,708 + GFF4739 0.83 -0.7
152,708 + GFF4739 0.83 +0.2
152,708 + GFF4739 0.83 +0.2
152,709 - GFF4739 0.83 +0.4
152,744 + GFF4739 0.84 -0.2
152,745 - GFF4739 0.84 -0.5
152,745 - GFF4739 0.84 -0.2
152,763 - GFF4739 0.84 +0.5
152,763 - GFF4739 0.84 -0.1
152,763 - GFF4739 0.84 -0.1
152,915 + GFF4739 0.88 +0.2
152,915 + GFF4739 0.88 -0.6
152,915 + GFF4739 0.88 +0.1
152,916 - GFF4739 0.88 +0.4
153,047 + -0.1
153,048 - +0.2
153,048 - -0.0
153,053 + +0.5
153,053 + -1.1
153,053 + +0.4
153,053 + -0.7
153,053 + -0.0
153,053 + +0.3
153,054 - -0.4
153,054 - -0.2
153,054 - +0.6
153,062 + -0.8
153,125 + -0.1
153,125 + +1.0
153,126 - +0.0
153,170 + +0.3
153,170 + +0.2
153,170 + -0.8
153,170 + +0.8
153,171 - +0.6
153,171 - +0.2
153,171 - -0.6
153,557 + -0.4
153,557 + -0.5
153,590 + +0.3
153,590 + -0.2
153,590 + +0.4
153,590 + -1.2
153,590 + -0.0
153,590 + +0.4
153,591 - -1.5
153,654 - -1.0
153,977 + GFF4740 0.18 -0.0
153,977 + GFF4740 0.18 +1.8
154,044 - GFF4740 0.21 -0.2
154,044 - GFF4740 0.21 -0.0
154,103 + GFF4740 0.23 -0.3
154,103 + GFF4740 0.23 -0.6
154,103 + GFF4740 0.23 +1.3
154,134 - GFF4740 0.24 -0.0
154,541 + GFF4740 0.38 -0.7
154,541 + GFF4740 0.38 +1.1
154,542 - GFF4740 0.39 -1.2
154,569 - GFF4740 0.40 +0.2
155,092 - GFF4740 0.58 -0.0
155,092 - GFF4740 0.58 -0.8
155,189 + GFF4740 0.62 +0.3
155,190 - GFF4740 0.62 -0.1
155,192 + GFF4740 0.62 -0.0
155,193 - GFF4740 0.62 +0.7
155,193 - GFF4740 0.62 -0.2
155,193 - GFF4740 0.62 -0.4
155,193 - GFF4740 0.62 -0.2
155,193 - GFF4740 0.62 -0.0
155,210 + GFF4740 0.63 -0.3
155,210 + GFF4740 0.63 +0.1
155,327 + GFF4740 0.67 +0.1
155,328 - GFF4740 0.67 +0.0
155,328 - GFF4740 0.67 +0.6
155,343 - GFF4740 0.67 -0.0
155,387 + GFF4740 0.69 +0.3
155,409 - GFF4740 0.70 -1.1
155,432 + GFF4740 0.71 -0.0
155,504 + GFF4740 0.73 +0.1
155,519 + GFF4740 0.74 -0.3
155,570 + GFF4740 0.76 -0.1
155,570 + GFF4740 0.76 +0.1
155,571 - GFF4740 0.76 -0.8
155,870 + GFF4740 0.86 +0.4
155,871 - GFF4740 0.87 -1.0
155,939 + GFF4740 0.89 +0.5
155,940 - GFF4740 0.89 -1.2
155,940 - GFF4740 0.89 -0.6
155,951 + GFF4740 0.89 +0.0
155,951 + GFF4740 0.89 -0.3
155,951 + GFF4740 0.89 -0.4
155,952 - GFF4740 0.89 -0.1
155,952 - GFF4740 0.89 +0.0
156,017 + +0.4
156,018 - -0.1
156,367 + +0.9
156,398 + -1.6
156,467 + +1.6
156,764 + GFF4741 0.39 -0.7
156,764 + GFF4741 0.39 -0.8
156,764 + GFF4741 0.39 -0.8
156,765 + GFF4741 0.40 -1.1
156,765 - GFF4741 0.40 +0.3
156,765 - GFF4741 0.40 -0.1

Or see this region's nucleotide sequence