Strain Fitness in Xanthobacter sp. DMC5 around GFF474

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF473 and GFF474 are separated by 91 nucleotidesGFF474 and GFF475 are separated by 290 nucleotidesGFF475 and GFF476 are separated by 39 nucleotides GFF473 - Leu/Ile/Val-binding protein, at 499,231 to 500,421 GFF473 GFF474 - HTH-type transcriptional repressor NagR, at 500,513 to 501,334 GFF474 GFF475 - hypothetical protein, at 501,625 to 502,173 GFF475 GFF476 - hypothetical protein, at 502,213 to 503,421 GFF476 Position (kb) 500 501 502Strain fitness (log2 ratio) -1 0 1at 499.576 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.631 kb on + strand, within GFF473at 499.632 kb on - strand, within GFF473at 499.653 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.796 kb on + strand, within GFF473at 499.797 kb on - strand, within GFF473at 499.797 kb on - strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.913 kb on + strand, within GFF473at 499.914 kb on - strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.967 kb on + strand, within GFF473at 499.968 kb on - strand, within GFF473at 499.968 kb on - strand, within GFF473at 499.968 kb on - strand, within GFF473at 500.168 kb on + strand, within GFF473at 500.168 kb on + strand, within GFF473at 500.169 kb on - strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.171 kb on + strand, within GFF473at 500.172 kb on - strand, within GFF473at 500.172 kb on - strand, within GFF473at 500.515 kb on - strandat 500.589 kb on + strandat 500.655 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.703 kb on + strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.704 kb on - strand, within GFF474at 500.844 kb on + strand, within GFF474at 500.845 kb on - strand, within GFF474at 500.851 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.212 kb on - strand, within GFF474at 501.249 kb on + strand, within GFF474at 501.249 kb on + strand, within GFF474at 501.250 kb on - strand, within GFF474at 501.399 kb on - strandat 501.627 kb on - strandat 501.627 kb on - strandat 501.627 kb on - strandat 501.765 kb on + strand, within GFF475at 501.932 kb on + strand, within GFF475at 501.933 kb on - strand, within GFF475at 501.933 kb on - strand, within GFF475at 501.970 kb on + strand, within GFF475at 502.016 kb on + strand, within GFF475at 502.016 kb on + strand, within GFF475at 502.016 kb on + strand, within GFF475at 502.016 kb on + strand, within GFF475at 502.040 kb on + strand, within GFF475at 502.040 kb on + strand, within GFF475at 502.040 kb on + strand, within GFF475at 502.040 kb on + strand, within GFF475at 502.041 kb on - strand, within GFF475at 502.041 kb on - strand, within GFF475at 502.041 kb on - strand, within GFF475at 502.041 kb on - strand, within GFF475at 502.041 kb on - strand, within GFF475at 502.041 kb on - strand, within GFF475at 502.292 kb on + strandat 502.292 kb on + strandat 502.292 kb on + strandat 502.292 kb on + strandat 502.292 kb on + strandat 502.292 kb on + strandat 502.293 kb on - strandat 502.293 kb on - strandat 502.293 kb on - strandat 502.293 kb on - strandat 502.293 kb on - strandat 502.296 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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499,576 + GFF473 0.29 +0.4
499,631 + GFF473 0.34 +0.1
499,631 + GFF473 0.34 -0.7
499,631 + GFF473 0.34 -0.2
499,632 - GFF473 0.34 +0.0
499,653 + GFF473 0.35 -0.4
499,796 + GFF473 0.47 +0.4
499,796 + GFF473 0.47 +0.2
499,796 + GFF473 0.47 -0.5
499,797 - GFF473 0.48 +0.4
499,797 - GFF473 0.48 +0.9
499,913 + GFF473 0.57 +0.2
499,913 + GFF473 0.57 -0.6
499,913 + GFF473 0.57 -0.8
499,914 - GFF473 0.57 +0.1
499,967 + GFF473 0.62 -0.2
499,967 + GFF473 0.62 +0.3
499,967 + GFF473 0.62 +0.8
499,967 + GFF473 0.62 +0.0
499,967 + GFF473 0.62 +0.4
499,968 - GFF473 0.62 -1.0
499,968 - GFF473 0.62 -0.2
499,968 - GFF473 0.62 +0.6
500,168 + GFF473 0.79 -0.6
500,168 + GFF473 0.79 +0.8
500,169 - GFF473 0.79 -0.2
500,171 + GFF473 0.79 -0.6
500,171 + GFF473 0.79 -0.4
500,171 + GFF473 0.79 +0.5
500,172 - GFF473 0.79 +0.3
500,172 - GFF473 0.79 +0.7
500,515 - -1.2
500,589 + -0.2
500,655 + GFF474 0.17 +0.3
500,703 + GFF474 0.23 -0.4
500,703 + GFF474 0.23 -1.1
500,703 + GFF474 0.23 -0.8
500,703 + GFF474 0.23 -0.5
500,704 - GFF474 0.23 +0.2
500,704 - GFF474 0.23 -0.8
500,704 - GFF474 0.23 -0.8
500,704 - GFF474 0.23 -0.7
500,844 + GFF474 0.40 -0.2
500,845 - GFF474 0.40 +1.4
500,851 - GFF474 0.41 +0.4
501,212 - GFF474 0.85 -0.1
501,212 - GFF474 0.85 -0.3
501,212 - GFF474 0.85 -1.0
501,212 - GFF474 0.85 +0.3
501,249 + GFF474 0.90 -1.0
501,249 + GFF474 0.90 +0.1
501,250 - GFF474 0.90 +0.4
501,399 - -0.8
501,627 - -0.9
501,627 - +0.3
501,627 - +0.8
501,765 + GFF475 0.26 -0.0
501,932 + GFF475 0.56 +0.3
501,933 - GFF475 0.56 +0.4
501,933 - GFF475 0.56 -0.3
501,970 + GFF475 0.63 +1.6
502,016 + GFF475 0.71 +0.7
502,016 + GFF475 0.71 +0.1
502,016 + GFF475 0.71 -0.0
502,016 + GFF475 0.71 -0.1
502,040 + GFF475 0.76 -0.6
502,040 + GFF475 0.76 +0.8
502,040 + GFF475 0.76 -0.4
502,040 + GFF475 0.76 -0.5
502,041 - GFF475 0.76 -0.6
502,041 - GFF475 0.76 -0.9
502,041 - GFF475 0.76 -0.2
502,041 - GFF475 0.76 -0.1
502,041 - GFF475 0.76 +0.2
502,041 - GFF475 0.76 -0.6
502,292 + -0.1
502,292 + +0.5
502,292 + -0.4
502,292 + +1.7
502,292 + +0.2
502,292 + -0.0
502,293 - +0.7
502,293 - +0.0
502,293 - +0.4
502,293 - -0.1
502,293 - -0.3
502,296 - -1.6

Or see this region's nucleotide sequence