Strain Fitness in Xanthobacter sp. DMC5 around GFF4728

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4726 and GFF4727 are separated by 24 nucleotidesGFF4727 and GFF4728 are separated by 61 nucleotidesGFF4728 and GFF4729 are separated by 34 nucleotides GFF4726 - hypothetical protein, at 137,190 to 137,870 GFF4726 GFF4727 - hypothetical protein, at 137,895 to 138,491 GFF4727 GFF4728 - hypothetical protein, at 138,553 to 138,885 GFF4728 GFF4729 - hypothetical protein, at 138,920 to 141,049 GFF4729 Position (kb) 138 139Strain fitness (log2 ratio) -1 0 1at 137.566 kb on + strand, within GFF4726at 137.745 kb on - strand, within GFF4726at 137.745 kb on - strand, within GFF4726at 137.745 kb on - strand, within GFF4726at 137.827 kb on - strandat 138.028 kb on + strand, within GFF4727at 138.029 kb on - strand, within GFF4727at 138.029 kb on - strand, within GFF4727at 138.067 kb on + strand, within GFF4727at 138.067 kb on + strand, within GFF4727at 138.529 kb on - strandat 138.711 kb on - strand, within GFF4728at 138.826 kb on + strand, within GFF4728at 138.826 kb on + strand, within GFF4728at 138.955 kb on - strandat 138.955 kb on - strandat 139.084 kb on - strandat 139.140 kb on + strand, within GFF4729at 139.141 kb on - strand, within GFF4729at 139.200 kb on - strand, within GFF4729at 139.212 kb on + strand, within GFF4729at 139.212 kb on + strand, within GFF4729at 139.236 kb on + strand, within GFF4729at 139.237 kb on - strand, within GFF4729at 139.237 kb on - strand, within GFF4729at 139.237 kb on - strand, within GFF4729at 139.359 kb on + strand, within GFF4729at 139.360 kb on - strand, within GFF4729at 139.360 kb on - strand, within GFF4729at 139.440 kb on + strand, within GFF4729at 139.440 kb on + strand, within GFF4729at 139.441 kb on - strand, within GFF4729at 139.441 kb on - strand, within GFF4729at 139.441 kb on - strand, within GFF4729

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
137,566 + GFF4726 0.55 -0.3
137,745 - GFF4726 0.81 +0.1
137,745 - GFF4726 0.81 +0.4
137,745 - GFF4726 0.81 -0.4
137,827 - -1.2
138,028 + GFF4727 0.22 -0.7
138,029 - GFF4727 0.22 -0.2
138,029 - GFF4727 0.22 -0.1
138,067 + GFF4727 0.29 +0.4
138,067 + GFF4727 0.29 -1.6
138,529 - +0.0
138,711 - GFF4728 0.47 +0.0
138,826 + GFF4728 0.82 +0.5
138,826 + GFF4728 0.82 -0.2
138,955 - +1.0
138,955 - -0.4
139,084 - -0.9
139,140 + GFF4729 0.10 +1.0
139,141 - GFF4729 0.10 -0.4
139,200 - GFF4729 0.13 -1.6
139,212 + GFF4729 0.14 +1.3
139,212 + GFF4729 0.14 -0.4
139,236 + GFF4729 0.15 -0.2
139,237 - GFF4729 0.15 +0.9
139,237 - GFF4729 0.15 -0.1
139,237 - GFF4729 0.15 +1.3
139,359 + GFF4729 0.21 -0.5
139,360 - GFF4729 0.21 +0.9
139,360 - GFF4729 0.21 -0.7
139,440 + GFF4729 0.24 -0.8
139,440 + GFF4729 0.24 +0.5
139,441 - GFF4729 0.24 -0.2
139,441 - GFF4729 0.24 +0.7
139,441 - GFF4729 0.24 -0.1

Or see this region's nucleotide sequence