Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4652 and GFF4653 are separated by 58 nucleotides GFF4653 and GFF4654 are separated by 121 nucleotides GFF4654 and GFF4655 are separated by 169 nucleotides GFF4655 and GFF4656 are separated by 30 nucleotides
GFF4652 - hypothetical protein, at 61,814 to 62,215
GFF4652
GFF4653 - putative GST-like protein YibF, at 62,274 to 62,873
GFF4653
GFF4654 - Ribosomal RNA large subunit methyltransferase J, at 62,995 to 63,867
GFF4654
GFF4655 - hypothetical protein, at 64,037 to 64,435
GFF4655
GFF4656 - Ribonuclease, at 64,466 to 65,158
GFF4656
Position (kb) 62
63
64 Strain fitness (log2 ratio) -1
0
1 at 62.030 kb on + strand, within GFF4652 at 62.030 kb on + strand, within GFF4652 at 62.030 kb on + strand, within GFF4652 at 62.031 kb on - strand, within GFF4652 at 62.115 kb on - strand, within GFF4652 at 62.115 kb on - strand, within GFF4652 at 62.115 kb on - strand, within GFF4652 at 62.139 kb on - strand, within GFF4652 at 62.144 kb on + strand, within GFF4652 at 62.201 kb on + strand at 62.201 kb on + strand at 62.202 kb on - strand at 62.202 kb on - strand at 62.440 kb on + strand, within GFF4653 at 62.548 kb on + strand, within GFF4653 at 62.548 kb on + strand, within GFF4653 at 62.548 kb on + strand, within GFF4653 at 62.549 kb on - strand, within GFF4653 at 62.549 kb on - strand, within GFF4653 at 62.549 kb on - strand, within GFF4653 at 62.668 kb on + strand, within GFF4653 at 62.669 kb on - strand, within GFF4653 at 62.889 kb on + strand at 62.890 kb on - strand at 63.255 kb on - strand, within GFF4654 at 63.609 kb on - strand, within GFF4654 at 63.609 kb on - strand, within GFF4654 at 63.728 kb on + strand, within GFF4654 at 63.789 kb on - strand at 63.789 kb on - strand at 63.861 kb on - strand at 63.930 kb on - strand at 64.238 kb on + strand, within GFF4655 at 64.239 kb on - strand, within GFF4655 at 64.239 kb on - strand, within GFF4655 at 64.307 kb on + strand, within GFF4655 at 64.307 kb on + strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.308 kb on - strand, within GFF4655 at 64.373 kb on + strand, within GFF4655 at 64.373 kb on + strand, within GFF4655 at 64.683 kb on + strand, within GFF4656 at 64.752 kb on + strand, within GFF4656 at 64.753 kb on - strand, within GFF4656 at 64.800 kb on + strand, within GFF4656 at 64.800 kb on + strand, within GFF4656 at 64.800 kb on + strand, within GFF4656 at 64.801 kb on - strand, within GFF4656 at 64.801 kb on - strand, within GFF4656 at 64.864 kb on - strand, within GFF4656
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 62,030 + GFF4652 0.54 -1.0 62,030 + GFF4652 0.54 +0.5 62,030 + GFF4652 0.54 -0.4 62,031 - GFF4652 0.54 -0.8 62,115 - GFF4652 0.75 +0.8 62,115 - GFF4652 0.75 +0.2 62,115 - GFF4652 0.75 +1.5 62,139 - GFF4652 0.81 -0.1 62,144 + GFF4652 0.82 -0.3 62,201 + -0.1 62,201 + -0.6 62,202 - -0.0 62,202 - -0.5 62,440 + GFF4653 0.28 +0.3 62,548 + GFF4653 0.46 +0.5 62,548 + GFF4653 0.46 -0.2 62,548 + GFF4653 0.46 +0.6 62,549 - GFF4653 0.46 -0.7 62,549 - GFF4653 0.46 +0.6 62,549 - GFF4653 0.46 -0.1 62,668 + GFF4653 0.66 +1.2 62,669 - GFF4653 0.66 +0.1 62,889 + -0.3 62,890 - +0.3 63,255 - GFF4654 0.30 +0.4 63,609 - GFF4654 0.70 +0.1 63,609 - GFF4654 0.70 +0.5 63,728 + GFF4654 0.84 +0.5 63,789 - -0.6 63,789 - -1.3 63,861 - -0.3 63,930 - -0.8 64,238 + GFF4655 0.50 +0.5 64,239 - GFF4655 0.51 -0.2 64,239 - GFF4655 0.51 +0.3 64,307 + GFF4655 0.68 +0.4 64,307 + GFF4655 0.68 -0.0 64,308 - GFF4655 0.68 -0.4 64,308 - GFF4655 0.68 +0.5 64,308 - GFF4655 0.68 -0.1 64,308 - GFF4655 0.68 +0.4 64,308 - GFF4655 0.68 -0.7 64,373 + GFF4655 0.84 -0.1 64,373 + GFF4655 0.84 +0.7 64,683 + GFF4656 0.31 +1.0 64,752 + GFF4656 0.41 +0.3 64,753 - GFF4656 0.41 -0.2 64,800 + GFF4656 0.48 +0.1 64,800 + GFF4656 0.48 -0.0 64,800 + GFF4656 0.48 +0.2 64,801 - GFF4656 0.48 +0.3 64,801 - GFF4656 0.48 +0.1 64,864 - GFF4656 0.57 +0.1
Or see this region's nucleotide sequence