Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4613 and GFF4614 are separated by 204 nucleotides GFF4614 and GFF4615 are separated by 12 nucleotides GFF4615 and GFF4616 are separated by 154 nucleotides GFF4616 and GFF4617 are separated by 108 nucleotides
GFF4613 - hypothetical protein, at 22,161 to 22,520
GFF4613
GFF4614 - hypothetical protein, at 22,725 to 23,234
GFF4614
GFF4615 - hypothetical protein, at 23,247 to 24,950
GFF4615
GFF4616 - Protein YrdA, at 25,105 to 25,635
GFF4616
GFF4617 - hypothetical protein, at 25,744 to 26,412
GFF4617
Position (kb) 23
24
25 Strain fitness (log2 ratio) -1
0
1
2 at 22.388 kb on - strand, within GFF4613 at 22.553 kb on - strand at 22.553 kb on - strand at 22.897 kb on + strand, within GFF4614 at 22.911 kb on - strand, within GFF4614 at 23.112 kb on + strand, within GFF4614 at 23.113 kb on - strand, within GFF4614 at 23.314 kb on + strand at 23.338 kb on + strand at 23.339 kb on - strand at 23.594 kb on - strand, within GFF4615 at 23.923 kb on + strand, within GFF4615 at 23.956 kb on + strand, within GFF4615 at 23.956 kb on + strand, within GFF4615 at 24.146 kb on + strand, within GFF4615 at 24.350 kb on - strand, within GFF4615 at 24.478 kb on + strand, within GFF4615 at 24.478 kb on + strand, within GFF4615 at 24.478 kb on + strand, within GFF4615 at 24.479 kb on - strand, within GFF4615 at 24.479 kb on - strand, within GFF4615 at 24.682 kb on + strand, within GFF4615 at 24.700 kb on + strand, within GFF4615 at 24.701 kb on - strand, within GFF4615 at 24.746 kb on - strand, within GFF4615 at 24.869 kb on - strand at 24.892 kb on + strand at 24.901 kb on + strand at 24.901 kb on + strand at 24.902 kb on - strand at 24.902 kb on - strand at 25.019 kb on + strand at 25.020 kb on - strand at 25.020 kb on - strand at 25.498 kb on + strand, within GFF4616
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 22,388 - GFF4613 0.63 +0.5 22,553 - -0.6 22,553 - -0.4 22,897 + GFF4614 0.34 -0.2 22,911 - GFF4614 0.36 +1.1 23,112 + GFF4614 0.76 +0.0 23,113 - GFF4614 0.76 -0.3 23,314 + -0.6 23,338 + -0.3 23,339 - -0.3 23,594 - GFF4615 0.20 +0.2 23,923 + GFF4615 0.40 +1.3 23,956 + GFF4615 0.42 -0.0 23,956 + GFF4615 0.42 +0.4 24,146 + GFF4615 0.53 +0.5 24,350 - GFF4615 0.65 -0.5 24,478 + GFF4615 0.72 -0.4 24,478 + GFF4615 0.72 -0.8 24,478 + GFF4615 0.72 +0.5 24,479 - GFF4615 0.72 -0.6 24,479 - GFF4615 0.72 +1.0 24,682 + GFF4615 0.84 +0.6 24,700 + GFF4615 0.85 -0.2 24,701 - GFF4615 0.85 +0.7 24,746 - GFF4615 0.88 +0.4 24,869 - -0.3 24,892 + -0.1 24,901 + +1.4 24,901 + -0.6 24,902 - +2.4 24,902 - +1.1 25,019 + +0.1 25,020 - +0.0 25,020 - +0.9 25,498 + GFF4616 0.74 -0.3
Or see this region's nucleotide sequence