Strain Fitness in Xanthobacter sp. DMC5 around GFF4603

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4601 and GFF4602 overlap by 4 nucleotidesGFF4602 and GFF4603 are separated by 233 nucleotidesGFF4603 and GFF4604 overlap by 4 nucleotidesGFF4604 and GFF4605 are separated by 137 nucleotides GFF4601 - hypothetical protein, at 10,102 to 10,785 GFF4601 GFF4602 - hypothetical protein, at 10,782 to 11,144 GFF4602 GFF4603 - Bicarbonate transport ATP-binding protein CmpD, at 11,378 to 12,205 GFF4603 GFF4604 - Putative aliphatic sulfonates transport permease protein SsuC, at 12,202 to 12,963 GFF4604 GFF4605 - hypothetical protein, at 13,101 to 14,096 GFF4605 Position (kb) 11 12 13Strain fitness (log2 ratio) -2 -1 0 1at 10.657 kb on + strand, within GFF4601at 10.657 kb on + strand, within GFF4601at 10.657 kb on + strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.658 kb on - strand, within GFF4601at 10.840 kb on - strand, within GFF4602at 10.840 kb on - strand, within GFF4602at 10.840 kb on - strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.852 kb on + strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 10.853 kb on - strand, within GFF4602at 11.036 kb on + strand, within GFF4602at 11.036 kb on + strand, within GFF4602at 11.123 kb on - strandat 11.231 kb on + strandat 11.409 kb on - strandat 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.553 kb on + strand, within GFF4603at 11.554 kb on - strand, within GFF4603at 11.585 kb on + strand, within GFF4603at 11.585 kb on + strand, within GFF4603at 11.586 kb on - strand, within GFF4603at 11.586 kb on - strand, within GFF4603at 11.899 kb on - strand, within GFF4603at 11.899 kb on - strand, within GFF4603at 11.899 kb on - strand, within GFF4603at 11.936 kb on + strand, within GFF4603at 11.957 kb on - strand, within GFF4603at 11.970 kb on + strand, within GFF4603at 11.970 kb on + strand, within GFF4603at 11.970 kb on + strand, within GFF4603at 11.970 kb on + strand, within GFF4603at 11.970 kb on + strand, within GFF4603at 11.970 kb on + strand, within GFF4603at 11.971 kb on - strand, within GFF4603at 11.971 kb on - strand, within GFF4603at 12.221 kb on + strandat 12.222 kb on - strandat 12.296 kb on + strand, within GFF4604at 12.296 kb on + strand, within GFF4604at 12.296 kb on + strand, within GFF4604at 12.297 kb on - strand, within GFF4604at 12.569 kb on + strand, within GFF4604at 12.659 kb on + strand, within GFF4604at 12.660 kb on - strand, within GFF4604at 12.660 kb on - strand, within GFF4604at 12.707 kb on + strand, within GFF4604at 12.707 kb on + strand, within GFF4604at 12.708 kb on - strand, within GFF4604at 12.708 kb on - strand, within GFF4604at 12.708 kb on - strand, within GFF4604at 12.777 kb on - strand, within GFF4604at 12.895 kb on + strandat 12.895 kb on + strandat 12.895 kb on + strandat 12.896 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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10,657 + GFF4601 0.81 -1.0
10,657 + GFF4601 0.81 +0.5
10,657 + GFF4601 0.81 -1.1
10,658 - GFF4601 0.81 +0.9
10,658 - GFF4601 0.81 -2.1
10,658 - GFF4601 0.81 -0.3
10,658 - GFF4601 0.81 -1.1
10,840 - GFF4602 0.16 -0.1
10,840 - GFF4602 0.16 +0.3
10,840 - GFF4602 0.16 -0.2
10,852 + GFF4602 0.19 +1.0
10,852 + GFF4602 0.19 +0.1
10,852 + GFF4602 0.19 +0.2
10,852 + GFF4602 0.19 +0.1
10,853 - GFF4602 0.20 +0.2
10,853 - GFF4602 0.20 +0.5
10,853 - GFF4602 0.20 +0.5
10,853 - GFF4602 0.20 -0.5
11,036 + GFF4602 0.70 -0.1
11,036 + GFF4602 0.70 -1.0
11,123 - +0.1
11,231 + +0.1
11,409 - -0.2
11,553 + GFF4603 0.21 -0.4
11,553 + GFF4603 0.21 -0.1
11,553 + GFF4603 0.21 +0.0
11,553 + GFF4603 0.21 -0.4
11,553 + GFF4603 0.21 -0.5
11,554 - GFF4603 0.21 -1.3
11,585 + GFF4603 0.25 +0.2
11,585 + GFF4603 0.25 -0.1
11,586 - GFF4603 0.25 -0.4
11,586 - GFF4603 0.25 +0.6
11,899 - GFF4603 0.63 +0.4
11,899 - GFF4603 0.63 +0.5
11,899 - GFF4603 0.63 -0.2
11,936 + GFF4603 0.67 -0.5
11,957 - GFF4603 0.70 +0.2
11,970 + GFF4603 0.71 +0.6
11,970 + GFF4603 0.71 +1.4
11,970 + GFF4603 0.71 -0.9
11,970 + GFF4603 0.71 +0.6
11,970 + GFF4603 0.71 +0.5
11,970 + GFF4603 0.71 -0.7
11,971 - GFF4603 0.72 -0.0
11,971 - GFF4603 0.72 +0.5
12,221 + -0.3
12,222 - +0.1
12,296 + GFF4604 0.12 +1.1
12,296 + GFF4604 0.12 +0.0
12,296 + GFF4604 0.12 +0.4
12,297 - GFF4604 0.12 +0.1
12,569 + GFF4604 0.48 +0.4
12,659 + GFF4604 0.60 +0.4
12,660 - GFF4604 0.60 +0.6
12,660 - GFF4604 0.60 -0.0
12,707 + GFF4604 0.66 -0.6
12,707 + GFF4604 0.66 -0.2
12,708 - GFF4604 0.66 -0.6
12,708 - GFF4604 0.66 -0.8
12,708 - GFF4604 0.66 +0.1
12,777 - GFF4604 0.75 -0.0
12,895 + +0.3
12,895 + +0.1
12,895 + -0.8
12,896 - -0.6

Or see this region's nucleotide sequence