Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF457 and GFF458 are separated by 155 nucleotides GFF458 and GFF459 are separated by 50 nucleotides GFF459 and GFF460 are separated by 218 nucleotides GFF460 and GFF461 are separated by 9 nucleotides
GFF457 - hypothetical protein, at 485,598 to 486,644
GFF457
GFF458 - hypothetical protein, at 486,800 to 487,543
GFF458
GFF459 - hypothetical protein, at 487,594 to 488,688
GFF459
GFF460 - hypothetical protein, at 488,907 to 489,233
GFF460
GFF461 - hypothetical protein, at 489,243 to 489,767
GFF461
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.660 kb on - strand at 487.067 kb on + strand, within GFF458 at 487.067 kb on + strand, within GFF458 at 487.068 kb on - strand, within GFF458 at 487.184 kb on - strand, within GFF458 at 487.541 kb on + strand at 487.542 kb on - strand at 488.136 kb on + strand, within GFF459 at 488.136 kb on + strand, within GFF459 at 488.136 kb on + strand, within GFF459 at 488.137 kb on - strand, within GFF459 at 488.297 kb on + strand, within GFF459 at 488.298 kb on - strand, within GFF459 at 488.298 kb on - strand, within GFF459 at 488.347 kb on + strand, within GFF459 at 488.360 kb on + strand, within GFF459 at 488.360 kb on + strand, within GFF459 at 488.361 kb on - strand, within GFF459 at 488.634 kb on + strand at 488.635 kb on - strand at 488.635 kb on - strand at 488.635 kb on - strand at 488.749 kb on + strand at 488.934 kb on + strand at 488.934 kb on + strand at 488.935 kb on - strand at 488.955 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.979 kb on + strand, within GFF460 at 488.980 kb on - strand, within GFF460 at 488.980 kb on - strand, within GFF460 at 489.176 kb on - strand, within GFF460 at 489.181 kb on - strand, within GFF460 at 489.244 kb on + strand at 489.301 kb on + strand, within GFF461 at 489.302 kb on - strand, within GFF461 at 489.333 kb on + strand, within GFF461 at 489.334 kb on - strand, within GFF461 at 489.334 kb on - strand, within GFF461 at 489.479 kb on - strand, within GFF461 at 489.479 kb on - strand, within GFF461 at 489.479 kb on - strand, within GFF461 at 489.485 kb on + strand, within GFF461 at 489.485 kb on + strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.486 kb on - strand, within GFF461 at 489.535 kb on + strand, within GFF461
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 486,660 - -0.0 487,067 + GFF458 0.36 -0.1 487,067 + GFF458 0.36 -2.4 487,068 - GFF458 0.36 +0.3 487,184 - GFF458 0.52 +0.0 487,541 + -0.6 487,542 - +0.3 488,136 + GFF459 0.49 +1.9 488,136 + GFF459 0.49 +0.2 488,136 + GFF459 0.49 +0.6 488,137 - GFF459 0.50 +0.3 488,297 + GFF459 0.64 +0.5 488,298 - GFF459 0.64 +0.4 488,298 - GFF459 0.64 -0.7 488,347 + GFF459 0.69 -0.1 488,360 + GFF459 0.70 -0.0 488,360 + GFF459 0.70 +0.1 488,361 - GFF459 0.70 +1.0 488,634 + -2.4 488,635 - -0.1 488,635 - -0.2 488,635 - -0.1 488,749 + +0.5 488,934 + +0.3 488,934 + +0.3 488,935 - -1.0 488,955 + GFF460 0.15 -0.6 488,979 + GFF460 0.22 +0.1 488,979 + GFF460 0.22 -0.4 488,979 + GFF460 0.22 +0.8 488,979 + GFF460 0.22 -0.6 488,980 - GFF460 0.22 -0.9 488,980 - GFF460 0.22 -0.2 489,176 - GFF460 0.82 +0.8 489,181 - GFF460 0.84 -0.6 489,244 + -0.9 489,301 + GFF461 0.11 -0.2 489,302 - GFF461 0.11 +0.2 489,333 + GFF461 0.17 -0.7 489,334 - GFF461 0.17 -0.3 489,334 - GFF461 0.17 +0.3 489,479 - GFF461 0.45 +0.1 489,479 - GFF461 0.45 -0.2 489,479 - GFF461 0.45 +0.1 489,485 + GFF461 0.46 +0.7 489,485 + GFF461 0.46 -0.2 489,486 - GFF461 0.46 -0.2 489,486 - GFF461 0.46 +0.6 489,486 - GFF461 0.46 -0.2 489,486 - GFF461 0.46 -0.6 489,535 + GFF461 0.56 +0.6
Or see this region's nucleotide sequence