Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4582 and GFF4583 are separated by 297 nucleotides GFF4583 and GFF4584 are separated by 346 nucleotides
GFF4582 - Coenzyme A biosynthesis bifunctional protein CoaBC, at 168,337 to 169,554
GFF4582
GFF4583 - hypothetical protein, at 169,852 to 172,221
GFF4583
GFF4584 - Nif-specific regulatory protein, at 172,568 to 174,346
GFF4584
Position (kb) 169
170
171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 169.641 kb on + strand at 169.783 kb on + strand at 169.783 kb on + strand at 169.783 kb on + strand at 169.790 kb on - strand at 169.790 kb on - strand at 169.860 kb on + strand at 169.860 kb on + strand at 170.182 kb on + strand, within GFF4583 at 170.182 kb on + strand, within GFF4583 at 170.182 kb on + strand, within GFF4583 at 170.182 kb on + strand, within GFF4583 at 170.183 kb on - strand, within GFF4583 at 170.183 kb on - strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.284 kb on + strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.285 kb on - strand, within GFF4583 at 170.353 kb on + strand, within GFF4583 at 170.427 kb on + strand, within GFF4583 at 170.427 kb on + strand, within GFF4583 at 170.428 kb on - strand, within GFF4583 at 170.428 kb on - strand, within GFF4583 at 170.428 kb on - strand, within GFF4583 at 170.428 kb on - strand, within GFF4583 at 170.633 kb on - strand, within GFF4583 at 170.652 kb on - strand, within GFF4583 at 170.743 kb on + strand, within GFF4583 at 170.891 kb on - strand, within GFF4583 at 171.302 kb on - strand, within GFF4583 at 171.337 kb on + strand, within GFF4583 at 171.337 kb on + strand, within GFF4583 at 171.337 kb on + strand, within GFF4583 at 171.338 kb on - strand, within GFF4583 at 171.338 kb on - strand, within GFF4583 at 171.405 kb on - strand, within GFF4583 at 171.466 kb on + strand, within GFF4583 at 171.467 kb on - strand, within GFF4583 at 171.469 kb on + strand, within GFF4583 at 171.469 kb on + strand, within GFF4583 at 171.469 kb on + strand, within GFF4583 at 171.898 kb on + strand, within GFF4583 at 171.898 kb on + strand, within GFF4583 at 171.941 kb on - strand, within GFF4583 at 172.661 kb on + strand at 172.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 169,641 + +0.3 169,783 + +0.9 169,783 + -0.6 169,783 + -0.8 169,790 - +0.3 169,790 - -0.3 169,860 + -0.4 169,860 + -0.8 170,182 + GFF4583 0.14 -0.3 170,182 + GFF4583 0.14 -0.8 170,182 + GFF4583 0.14 -0.5 170,182 + GFF4583 0.14 +0.3 170,183 - GFF4583 0.14 -1.0 170,183 - GFF4583 0.14 -0.7 170,284 + GFF4583 0.18 -1.3 170,284 + GFF4583 0.18 -0.3 170,284 + GFF4583 0.18 -0.9 170,284 + GFF4583 0.18 -0.8 170,285 - GFF4583 0.18 -0.9 170,285 - GFF4583 0.18 -0.5 170,285 - GFF4583 0.18 -0.9 170,285 - GFF4583 0.18 -1.3 170,285 - GFF4583 0.18 -1.9 170,285 - GFF4583 0.18 -0.2 170,285 - GFF4583 0.18 -0.0 170,353 + GFF4583 0.21 -0.2 170,427 + GFF4583 0.24 -0.6 170,427 + GFF4583 0.24 -0.5 170,428 - GFF4583 0.24 -0.2 170,428 - GFF4583 0.24 -0.8 170,428 - GFF4583 0.24 -1.0 170,428 - GFF4583 0.24 -2.0 170,633 - GFF4583 0.33 -0.6 170,652 - GFF4583 0.34 -0.8 170,743 + GFF4583 0.38 -1.0 170,891 - GFF4583 0.44 -1.0 171,302 - GFF4583 0.61 -0.6 171,337 + GFF4583 0.63 -0.5 171,337 + GFF4583 0.63 -0.4 171,337 + GFF4583 0.63 +0.9 171,338 - GFF4583 0.63 -1.4 171,338 - GFF4583 0.63 -0.4 171,405 - GFF4583 0.66 -0.9 171,466 + GFF4583 0.68 -1.3 171,467 - GFF4583 0.68 -0.1 171,469 + GFF4583 0.68 -0.8 171,469 + GFF4583 0.68 -0.1 171,469 + GFF4583 0.68 -0.7 171,898 + GFF4583 0.86 -1.2 171,898 + GFF4583 0.86 -0.7 171,941 - GFF4583 0.88 -0.7 172,661 + +0.8 172,724 - -0.2
Or see this region's nucleotide sequence