Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4546 and GFF4547 overlap by 4 nucleotides GFF4547 and GFF4548 are separated by 31 nucleotides GFF4548 and GFF4549 are separated by 240 nucleotides
GFF4546 - Short-chain-enoyl-CoA hydratase, at 126,702 to 127,493
GFF4546
GFF4547 - 2-hydroxy-3-oxopropionate reductase, at 127,490 to 128,401
GFF4547
GFF4548 - NADPH dehydrogenase, at 128,433 to 129,908
GFF4548
GFF4549 - hypothetical protein, at 130,149 to 131,840
GFF4549
Position (kb) 128
129
130 Strain fitness (log2 ratio) -2
-1
0
1
2 at 127.684 kb on - strand, within GFF4547 at 127.684 kb on - strand, within GFF4547 at 127.792 kb on + strand, within GFF4547 at 127.793 kb on - strand, within GFF4547 at 128.040 kb on + strand, within GFF4547 at 128.422 kb on - strand at 128.422 kb on - strand at 128.422 kb on - strand at 128.422 kb on - strand at 128.430 kb on - strand at 128.430 kb on - strand at 128.476 kb on - strand at 128.512 kb on + strand at 128.513 kb on - strand at 128.627 kb on - strand, within GFF4548 at 128.716 kb on + strand, within GFF4548 at 128.716 kb on + strand, within GFF4548 at 128.716 kb on + strand, within GFF4548 at 128.716 kb on + strand, within GFF4548 at 128.716 kb on + strand, within GFF4548 at 128.717 kb on - strand, within GFF4548 at 128.717 kb on - strand, within GFF4548 at 128.717 kb on - strand, within GFF4548 at 128.717 kb on - strand, within GFF4548 at 128.717 kb on - strand, within GFF4548 at 128.722 kb on + strand, within GFF4548 at 128.722 kb on + strand, within GFF4548 at 128.723 kb on - strand, within GFF4548 at 128.824 kb on + strand, within GFF4548 at 128.843 kb on - strand, within GFF4548 at 128.843 kb on - strand, within GFF4548 at 128.872 kb on + strand, within GFF4548 at 128.872 kb on + strand, within GFF4548 at 128.872 kb on + strand, within GFF4548 at 128.872 kb on + strand, within GFF4548 at 128.873 kb on - strand, within GFF4548 at 128.873 kb on - strand, within GFF4548 at 128.959 kb on + strand, within GFF4548 at 128.959 kb on + strand, within GFF4548 at 128.959 kb on + strand, within GFF4548 at 128.960 kb on - strand, within GFF4548 at 128.960 kb on - strand, within GFF4548 at 128.995 kb on + strand, within GFF4548 at 128.996 kb on - strand, within GFF4548 at 129.001 kb on + strand, within GFF4548 at 129.001 kb on + strand, within GFF4548 at 129.001 kb on + strand, within GFF4548 at 129.001 kb on + strand, within GFF4548 at 129.002 kb on - strand, within GFF4548 at 129.002 kb on - strand, within GFF4548 at 129.002 kb on - strand, within GFF4548 at 129.272 kb on - strand, within GFF4548 at 129.356 kb on - strand, within GFF4548 at 129.400 kb on + strand, within GFF4548 at 129.629 kb on - strand, within GFF4548 at 129.629 kb on - strand, within GFF4548 at 129.629 kb on - strand, within GFF4548 at 129.883 kb on - strand at 129.901 kb on + strand at 130.044 kb on - strand at 130.066 kb on - strand at 130.066 kb on - strand at 130.132 kb on + strand at 130.133 kb on - strand at 130.133 kb on - strand at 130.133 kb on - strand at 130.133 kb on - strand at 130.137 kb on - strand at 130.150 kb on + strand at 130.150 kb on + strand at 130.163 kb on + strand at 130.259 kb on - strand at 130.326 kb on - strand, within GFF4549 at 130.390 kb on + strand, within GFF4549 at 130.449 kb on - strand, within GFF4549 at 130.456 kb on - strand, within GFF4549 at 130.482 kb on - strand, within GFF4549 at 130.582 kb on - strand, within GFF4549 at 130.619 kb on + strand, within GFF4549
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 127,684 - GFF4547 0.21 -0.6 127,684 - GFF4547 0.21 -1.0 127,792 + GFF4547 0.33 -0.8 127,793 - GFF4547 0.33 -0.1 128,040 + GFF4547 0.60 -0.0 128,422 - -0.1 128,422 - -0.1 128,422 - -0.6 128,422 - +0.0 128,430 - -0.7 128,430 - -0.3 128,476 - +0.4 128,512 + +0.5 128,513 - -0.7 128,627 - GFF4548 0.13 -1.0 128,716 + GFF4548 0.19 -2.1 128,716 + GFF4548 0.19 +0.2 128,716 + GFF4548 0.19 +0.5 128,716 + GFF4548 0.19 +0.2 128,716 + GFF4548 0.19 -0.8 128,717 - GFF4548 0.19 -0.6 128,717 - GFF4548 0.19 -0.1 128,717 - GFF4548 0.19 +0.3 128,717 - GFF4548 0.19 +0.4 128,717 - GFF4548 0.19 +0.1 128,722 + GFF4548 0.20 -1.2 128,722 + GFF4548 0.20 -0.6 128,723 - GFF4548 0.20 -0.5 128,824 + GFF4548 0.26 -0.2 128,843 - GFF4548 0.28 +0.3 128,843 - GFF4548 0.28 +0.7 128,872 + GFF4548 0.30 -0.7 128,872 + GFF4548 0.30 -0.3 128,872 + GFF4548 0.30 +0.9 128,872 + GFF4548 0.30 +0.6 128,873 - GFF4548 0.30 -0.1 128,873 - GFF4548 0.30 +0.2 128,959 + GFF4548 0.36 +0.2 128,959 + GFF4548 0.36 -0.1 128,959 + GFF4548 0.36 +0.4 128,960 - GFF4548 0.36 +1.4 128,960 - GFF4548 0.36 +1.9 128,995 + GFF4548 0.38 -0.2 128,996 - GFF4548 0.38 +0.2 129,001 + GFF4548 0.38 -0.2 129,001 + GFF4548 0.38 -0.6 129,001 + GFF4548 0.38 -0.1 129,001 + GFF4548 0.38 -0.1 129,002 - GFF4548 0.39 -0.4 129,002 - GFF4548 0.39 -1.2 129,002 - GFF4548 0.39 -0.6 129,272 - GFF4548 0.57 -0.2 129,356 - GFF4548 0.63 +0.2 129,400 + GFF4548 0.66 +0.4 129,629 - GFF4548 0.81 +0.1 129,629 - GFF4548 0.81 +0.5 129,629 - GFF4548 0.81 +1.3 129,883 - -0.4 129,901 + +0.5 130,044 - -0.4 130,066 - +0.3 130,066 - -0.4 130,132 + +0.0 130,133 - +0.3 130,133 - +0.5 130,133 - -0.6 130,133 - -0.3 130,137 - +2.3 130,150 + +0.2 130,150 + +0.4 130,163 + -0.7 130,259 - +0.3 130,326 - GFF4549 0.10 +0.1 130,390 + GFF4549 0.14 -0.2 130,449 - GFF4549 0.18 -0.8 130,456 - GFF4549 0.18 +0.1 130,482 - GFF4549 0.20 +0.4 130,582 - GFF4549 0.26 -0.2 130,619 + GFF4549 0.28 -0.4
Or see this region's nucleotide sequence