Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4542 and GFF4543 are separated by 164 nucleotides GFF4543 and GFF4544 overlap by 4 nucleotides GFF4544 and GFF4545 are separated by 68 nucleotides
GFF4542 - Riboflavin-binding protein RibY, at 121,896 to 122,891
GFF4542
GFF4543 - Shikimate dehydrogenase (NADP(+)), at 123,056 to 123,859
GFF4543
GFF4544 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 123,856 to 124,644
GFF4544
GFF4545 - hypothetical protein, at 124,713 to 126,686
GFF4545
Position (kb) 123
124
125 Strain fitness (log2 ratio) -2
-1
0
1
2 at 122.901 kb on - strand at 122.996 kb on - strand at 123.055 kb on + strand at 123.055 kb on + strand at 123.055 kb on + strand at 123.055 kb on + strand at 123.056 kb on - strand at 123.056 kb on - strand at 123.080 kb on + strand at 123.080 kb on + strand at 123.081 kb on - strand at 123.081 kb on - strand at 123.137 kb on + strand, within GFF4543 at 123.137 kb on + strand, within GFF4543 at 123.138 kb on - strand, within GFF4543 at 123.138 kb on - strand, within GFF4543 at 123.289 kb on - strand, within GFF4543 at 123.289 kb on - strand, within GFF4543 at 123.441 kb on - strand, within GFF4543 at 123.441 kb on - strand, within GFF4543 at 123.828 kb on - strand at 123.982 kb on + strand, within GFF4544 at 123.982 kb on + strand, within GFF4544 at 123.983 kb on - strand, within GFF4544 at 123.983 kb on - strand, within GFF4544 at 123.983 kb on - strand, within GFF4544 at 123.983 kb on - strand, within GFF4544 at 123.983 kb on - strand, within GFF4544 at 123.983 kb on - strand, within GFF4544 at 124.035 kb on + strand, within GFF4544 at 124.226 kb on - strand, within GFF4544 at 124.508 kb on + strand, within GFF4544 at 124.509 kb on - strand, within GFF4544 at 124.509 kb on - strand, within GFF4544 at 124.509 kb on - strand, within GFF4544 at 124.647 kb on + strand at 124.647 kb on + strand at 124.653 kb on - strand at 124.721 kb on - strand at 124.752 kb on + strand at 124.752 kb on + strand at 124.753 kb on - strand at 124.782 kb on + strand at 124.782 kb on + strand at 124.783 kb on - strand at 124.841 kb on + strand at 125.104 kb on - strand, within GFF4545 at 125.114 kb on + strand, within GFF4545 at 125.175 kb on + strand, within GFF4545 at 125.235 kb on + strand, within GFF4545 at 125.290 kb on - strand, within GFF4545 at 125.301 kb on + strand, within GFF4545 at 125.301 kb on + strand, within GFF4545 at 125.302 kb on - strand, within GFF4545 at 125.302 kb on - strand, within GFF4545 at 125.318 kb on - strand, within GFF4545 at 125.328 kb on - strand, within GFF4545 at 125.328 kb on - strand, within GFF4545 at 125.340 kb on + strand, within GFF4545 at 125.340 kb on + strand, within GFF4545 at 125.341 kb on - strand, within GFF4545 at 125.341 kb on - strand, within GFF4545 at 125.398 kb on + strand, within GFF4545 at 125.398 kb on + strand, within GFF4545 at 125.398 kb on + strand, within GFF4545 at 125.399 kb on - strand, within GFF4545 at 125.399 kb on - strand, within GFF4545 at 125.499 kb on - strand, within GFF4545 at 125.525 kb on + strand, within GFF4545 at 125.538 kb on - strand, within GFF4545 at 125.622 kb on - strand, within GFF4545
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 122,901 - +1.8 122,996 - -0.9 123,055 + -0.6 123,055 + -0.6 123,055 + -0.6 123,055 + +0.7 123,056 - +0.3 123,056 - -0.4 123,080 + -0.9 123,080 + -0.7 123,081 - -0.1 123,081 - +0.2 123,137 + GFF4543 0.10 -0.1 123,137 + GFF4543 0.10 -0.3 123,138 - GFF4543 0.10 +0.5 123,138 - GFF4543 0.10 -0.0 123,289 - GFF4543 0.29 -0.0 123,289 - GFF4543 0.29 +0.2 123,441 - GFF4543 0.48 -0.4 123,441 - GFF4543 0.48 +0.2 123,828 - -2.7 123,982 + GFF4544 0.16 +1.3 123,982 + GFF4544 0.16 -0.1 123,983 - GFF4544 0.16 +0.4 123,983 - GFF4544 0.16 -1.3 123,983 - GFF4544 0.16 -0.6 123,983 - GFF4544 0.16 -0.1 123,983 - GFF4544 0.16 -0.2 123,983 - GFF4544 0.16 -0.8 124,035 + GFF4544 0.23 -1.8 124,226 - GFF4544 0.47 -1.2 124,508 + GFF4544 0.83 +0.3 124,509 - GFF4544 0.83 -0.7 124,509 - GFF4544 0.83 +0.1 124,509 - GFF4544 0.83 -0.2 124,647 + -1.0 124,647 + -0.3 124,653 - +0.9 124,721 - +0.9 124,752 + +0.1 124,752 + -0.6 124,753 - -0.2 124,782 + -0.4 124,782 + +0.0 124,783 - -0.2 124,841 + +0.1 125,104 - GFF4545 0.20 -0.2 125,114 + GFF4545 0.20 -0.0 125,175 + GFF4545 0.23 +1.0 125,235 + GFF4545 0.26 -0.0 125,290 - GFF4545 0.29 -0.2 125,301 + GFF4545 0.30 -1.2 125,301 + GFF4545 0.30 -0.0 125,302 - GFF4545 0.30 -0.1 125,302 - GFF4545 0.30 -0.6 125,318 - GFF4545 0.31 +0.1 125,328 - GFF4545 0.31 +0.1 125,328 - GFF4545 0.31 -0.5 125,340 + GFF4545 0.32 -0.0 125,340 + GFF4545 0.32 +0.1 125,341 - GFF4545 0.32 -0.4 125,341 - GFF4545 0.32 +0.4 125,398 + GFF4545 0.35 +0.0 125,398 + GFF4545 0.35 -1.7 125,398 + GFF4545 0.35 -0.6 125,399 - GFF4545 0.35 -1.1 125,399 - GFF4545 0.35 -1.2 125,499 - GFF4545 0.40 -1.1 125,525 + GFF4545 0.41 -1.1 125,538 - GFF4545 0.42 +0.9 125,622 - GFF4545 0.46 +0.2
Or see this region's nucleotide sequence