Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4539 and GFF4540 are separated by 438 nucleotides GFF4540 and GFF4541 are separated by 97 nucleotides
GFF4539 - Putative thiamine biosynthesis protein, at 118,060 to 119,076
GFF4539
GFF4540 - HTH-type transcriptional repressor NicR, at 119,515 to 120,033
GFF4540
GFF4541 - Coniferyl aldehyde dehydrogenase, at 120,131 to 121,423
GFF4541
Position (kb) 119
120
121 Strain fitness (log2 ratio) -1
0
1 at 118.559 kb on + strand, within GFF4539 at 118.559 kb on + strand, within GFF4539 at 118.559 kb on + strand, within GFF4539 at 118.559 kb on + strand, within GFF4539 at 118.560 kb on - strand, within GFF4539 at 118.560 kb on - strand, within GFF4539 at 118.713 kb on + strand, within GFF4539 at 118.756 kb on + strand, within GFF4539 at 118.757 kb on - strand, within GFF4539 at 118.757 kb on - strand, within GFF4539 at 118.839 kb on - strand, within GFF4539 at 118.861 kb on + strand, within GFF4539 at 118.861 kb on + strand, within GFF4539 at 118.862 kb on - strand, within GFF4539 at 118.862 kb on - strand, within GFF4539 at 118.870 kb on + strand, within GFF4539 at 118.870 kb on + strand, within GFF4539 at 118.959 kb on + strand, within GFF4539 at 119.037 kb on + strand at 119.146 kb on + strand at 119.573 kb on - strand, within GFF4540 at 119.654 kb on - strand, within GFF4540 at 119.654 kb on - strand, within GFF4540 at 119.860 kb on + strand, within GFF4540 at 119.860 kb on + strand, within GFF4540 at 119.861 kb on - strand, within GFF4540 at 119.861 kb on - strand, within GFF4540 at 119.861 kb on - strand, within GFF4540 at 120.279 kb on + strand, within GFF4541 at 120.279 kb on + strand, within GFF4541 at 120.279 kb on + strand, within GFF4541 at 120.279 kb on + strand, within GFF4541 at 120.280 kb on - strand, within GFF4541 at 120.302 kb on + strand, within GFF4541 at 120.303 kb on - strand, within GFF4541 at 120.303 kb on - strand, within GFF4541 at 120.353 kb on + strand, within GFF4541 at 120.423 kb on + strand, within GFF4541 at 120.423 kb on + strand, within GFF4541 at 120.423 kb on + strand, within GFF4541 at 120.424 kb on - strand, within GFF4541 at 120.424 kb on - strand, within GFF4541 at 120.497 kb on + strand, within GFF4541 at 120.682 kb on + strand, within GFF4541 at 120.780 kb on + strand, within GFF4541 at 120.780 kb on + strand, within GFF4541 at 120.781 kb on - strand, within GFF4541 at 120.858 kb on + strand, within GFF4541 at 120.858 kb on + strand, within GFF4541 at 120.859 kb on - strand, within GFF4541 at 120.859 kb on - strand, within GFF4541 at 120.859 kb on - strand, within GFF4541 at 120.859 kb on - strand, within GFF4541
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 118,559 + GFF4539 0.49 +0.6 118,559 + GFF4539 0.49 +0.2 118,559 + GFF4539 0.49 +0.6 118,559 + GFF4539 0.49 +0.1 118,560 - GFF4539 0.49 +0.4 118,560 - GFF4539 0.49 -0.1 118,713 + GFF4539 0.64 +0.4 118,756 + GFF4539 0.68 +1.0 118,757 - GFF4539 0.69 -0.3 118,757 - GFF4539 0.69 +0.3 118,839 - GFF4539 0.77 +0.0 118,861 + GFF4539 0.79 +0.4 118,861 + GFF4539 0.79 +1.1 118,862 - GFF4539 0.79 -0.2 118,862 - GFF4539 0.79 -0.4 118,870 + GFF4539 0.80 +0.6 118,870 + GFF4539 0.80 +0.4 118,959 + GFF4539 0.88 +1.0 119,037 + -0.9 119,146 + +0.1 119,573 - GFF4540 0.11 -1.1 119,654 - GFF4540 0.27 -0.2 119,654 - GFF4540 0.27 -1.7 119,860 + GFF4540 0.66 +0.4 119,860 + GFF4540 0.66 -0.9 119,861 - GFF4540 0.67 -0.3 119,861 - GFF4540 0.67 +0.1 119,861 - GFF4540 0.67 -1.6 120,279 + GFF4541 0.11 -1.2 120,279 + GFF4541 0.11 +0.3 120,279 + GFF4541 0.11 -0.9 120,279 + GFF4541 0.11 +0.1 120,280 - GFF4541 0.12 -1.1 120,302 + GFF4541 0.13 -0.4 120,303 - GFF4541 0.13 -0.9 120,303 - GFF4541 0.13 -0.0 120,353 + GFF4541 0.17 -0.6 120,423 + GFF4541 0.23 +0.7 120,423 + GFF4541 0.23 +0.2 120,423 + GFF4541 0.23 -0.6 120,424 - GFF4541 0.23 +0.9 120,424 - GFF4541 0.23 +0.8 120,497 + GFF4541 0.28 +0.2 120,682 + GFF4541 0.43 +0.7 120,780 + GFF4541 0.50 +0.0 120,780 + GFF4541 0.50 -0.1 120,781 - GFF4541 0.50 -1.1 120,858 + GFF4541 0.56 -0.0 120,858 + GFF4541 0.56 +0.3 120,859 - GFF4541 0.56 -1.2 120,859 - GFF4541 0.56 +0.0 120,859 - GFF4541 0.56 +0.6 120,859 - GFF4541 0.56 +1.3
Or see this region's nucleotide sequence