Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4495 and GFF4496 are separated by 38 nucleotides GFF4496 and GFF4497 are separated by 7 nucleotides GFF4497 and GFF4498 are separated by 27 nucleotides GFF4498 and GFF4499 overlap by 20 nucleotides
GFF4495 - Flagellar biosynthetic protein FlhB, at 71,919 to 72,995
GFF4495
GFF4496 - Flagellar motor switch protein FliG, at 73,034 to 74,056
GFF4496
GFF4497 - Flagellar motor switch protein FliN, at 74,064 to 74,414
GFF4497
GFF4498 - hypothetical protein, at 74,442 to 74,744
GFF4498
GFF4499 - hypothetical protein, at 74,725 to 75,660
GFF4499
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1 at 72.154 kb on + strand, within GFF4495 at 72.154 kb on + strand, within GFF4495 at 72.155 kb on - strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.173 kb on - strand, within GFF4495 at 72.496 kb on + strand, within GFF4495 at 72.496 kb on + strand, within GFF4495 at 72.497 kb on - strand, within GFF4495 at 72.497 kb on - strand, within GFF4495 at 73.044 kb on + strand at 73.044 kb on + strand at 73.044 kb on + strand at 73.044 kb on + strand at 73.045 kb on - strand at 73.045 kb on - strand at 73.045 kb on - strand at 73.074 kb on + strand at 73.678 kb on - strand, within GFF4496 at 73.678 kb on - strand, within GFF4496 at 74.632 kb on + strand, within GFF4498 at 74.632 kb on + strand, within GFF4498 at 74.632 kb on + strand, within GFF4498 at 74.792 kb on + strand at 74.793 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 72,154 + GFF4495 0.22 -0.1 72,154 + GFF4495 0.22 +0.3 72,155 - GFF4495 0.22 -0.2 72,172 + GFF4495 0.23 -2.3 72,172 + GFF4495 0.23 -0.1 72,172 + GFF4495 0.23 +0.6 72,173 - GFF4495 0.24 +0.3 72,496 + GFF4495 0.54 +0.4 72,496 + GFF4495 0.54 +1.0 72,497 - GFF4495 0.54 +0.1 72,497 - GFF4495 0.54 -0.4 73,044 + -0.4 73,044 + -0.1 73,044 + -0.6 73,044 + -0.3 73,045 - -1.0 73,045 - -0.3 73,045 - +0.2 73,074 + +1.5 73,678 - GFF4496 0.63 -0.4 73,678 - GFF4496 0.63 -0.8 74,632 + GFF4498 0.63 +0.3 74,632 + GFF4498 0.63 -0.3 74,632 + GFF4498 0.63 -0.2 74,792 + +0.8 74,793 - +0.8
Or see this region's nucleotide sequence