Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4492 and GFF4493 overlap by 4 nucleotides GFF4493 and GFF4494 are separated by 113 nucleotides GFF4494 and GFF4495 overlap by 14 nucleotides GFF4495 and GFF4496 are separated by 38 nucleotides
GFF4492 - Flagellar basal-body rod protein FlgC, at 70,564 to 70,986
GFF4492
GFF4493 - hypothetical protein, at 70,983 to 71,363
GFF4493
GFF4494 - hypothetical protein, at 71,477 to 71,932
GFF4494
GFF4495 - Flagellar biosynthetic protein FlhB, at 71,919 to 72,995
GFF4495
GFF4496 - Flagellar motor switch protein FliG, at 73,034 to 74,056
GFF4496
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 71.048 kb on - strand, within GFF4493 at 71.243 kb on + strand, within GFF4493 at 71.257 kb on + strand, within GFF4493 at 71.257 kb on + strand, within GFF4493 at 71.267 kb on + strand, within GFF4493 at 71.267 kb on + strand, within GFF4493 at 71.268 kb on - strand, within GFF4493 at 71.421 kb on + strand at 71.783 kb on + strand, within GFF4494 at 71.784 kb on - strand, within GFF4494 at 71.786 kb on - strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.787 kb on + strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.788 kb on - strand, within GFF4494 at 71.948 kb on - strand at 71.948 kb on - strand at 71.953 kb on + strand at 71.953 kb on + strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.954 kb on - strand at 71.980 kb on + strand at 72.154 kb on + strand, within GFF4495 at 72.154 kb on + strand, within GFF4495 at 72.155 kb on - strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.172 kb on + strand, within GFF4495 at 72.173 kb on - strand, within GFF4495 at 72.496 kb on + strand, within GFF4495 at 72.496 kb on + strand, within GFF4495 at 72.497 kb on - strand, within GFF4495 at 72.497 kb on - strand, within GFF4495 at 73.044 kb on + strand at 73.044 kb on + strand at 73.044 kb on + strand at 73.044 kb on + strand at 73.045 kb on - strand at 73.045 kb on - strand at 73.045 kb on - strand at 73.074 kb on + strand at 73.678 kb on - strand, within GFF4496 at 73.678 kb on - strand, within GFF4496
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 71,048 - GFF4493 0.17 -0.3 71,243 + GFF4493 0.68 -0.8 71,257 + GFF4493 0.72 -0.4 71,257 + GFF4493 0.72 +1.1 71,267 + GFF4493 0.75 -0.1 71,267 + GFF4493 0.75 -0.4 71,268 - GFF4493 0.75 +0.5 71,421 + -1.0 71,783 + GFF4494 0.67 -0.5 71,784 - GFF4494 0.67 -0.3 71,786 - GFF4494 0.68 +0.1 71,787 + GFF4494 0.68 +1.2 71,787 + GFF4494 0.68 +0.9 71,787 + GFF4494 0.68 -0.9 71,787 + GFF4494 0.68 +0.5 71,788 - GFF4494 0.68 -0.2 71,788 - GFF4494 0.68 +1.0 71,788 - GFF4494 0.68 +0.6 71,788 - GFF4494 0.68 -1.1 71,788 - GFF4494 0.68 -0.6 71,788 - GFF4494 0.68 -0.1 71,948 - +0.4 71,948 - +0.9 71,953 + -0.2 71,953 + +0.2 71,954 - -0.5 71,954 - +0.1 71,954 - +0.0 71,954 - -0.5 71,980 + +0.7 72,154 + GFF4495 0.22 -0.1 72,154 + GFF4495 0.22 +0.3 72,155 - GFF4495 0.22 -0.2 72,172 + GFF4495 0.23 -2.3 72,172 + GFF4495 0.23 -0.1 72,172 + GFF4495 0.23 +0.6 72,173 - GFF4495 0.24 +0.3 72,496 + GFF4495 0.54 +0.4 72,496 + GFF4495 0.54 +1.0 72,497 - GFF4495 0.54 +0.1 72,497 - GFF4495 0.54 -0.4 73,044 + -0.4 73,044 + -0.1 73,044 + -0.6 73,044 + -0.3 73,045 - -1.0 73,045 - -0.3 73,045 - +0.2 73,074 + +1.5 73,678 - GFF4496 0.63 -0.4 73,678 - GFF4496 0.63 -0.8
Or see this region's nucleotide sequence