Strain Fitness in Xanthobacter sp. DMC5 around GFF4474

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4473 and GFF4474 are separated by 71 nucleotidesGFF4474 and GFF4475 are separated by 336 nucleotidesGFF4475 and GFF4476 are separated by 181 nucleotides GFF4473 - hypothetical protein, at 51,399 to 52,334 GFF4473 GFF4474 - hypothetical protein, at 52,406 to 53,530 GFF4474 GFF4475 - Chemotaxis protein CheY, at 53,867 to 54,274 GFF4475 GFF4476 - hypothetical protein, at 54,456 to 55,154 GFF4476 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 51.507 kb on + strand, within GFF4473at 51.747 kb on + strand, within GFF4473at 51.747 kb on + strand, within GFF4473at 51.748 kb on - strand, within GFF4473at 51.748 kb on - strand, within GFF4473at 51.877 kb on - strand, within GFF4473at 51.877 kb on - strand, within GFF4473at 51.942 kb on + strand, within GFF4473at 51.942 kb on + strand, within GFF4473at 51.942 kb on + strand, within GFF4473at 51.943 kb on - strand, within GFF4473at 51.969 kb on + strand, within GFF4473at 52.193 kb on + strand, within GFF4473at 52.194 kb on - strand, within GFF4473at 52.333 kb on - strandat 52.347 kb on - strandat 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.757 kb on + strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.758 kb on - strand, within GFF4474at 52.941 kb on - strand, within GFF4474at 52.981 kb on - strand, within GFF4474at 52.981 kb on - strand, within GFF4474at 53.051 kb on + strand, within GFF4474at 53.051 kb on + strand, within GFF4474at 53.052 kb on - strand, within GFF4474at 53.159 kb on + strand, within GFF4474at 53.168 kb on + strand, within GFF4474at 53.169 kb on - strand, within GFF4474at 53.169 kb on - strand, within GFF4474at 53.297 kb on + strand, within GFF4474at 53.297 kb on + strand, within GFF4474at 53.298 kb on - strand, within GFF4474at 53.298 kb on - strand, within GFF4474at 53.298 kb on - strand, within GFF4474at 53.373 kb on - strand, within GFF4474at 53.373 kb on - strand, within GFF4474at 53.373 kb on - strand, within GFF4474at 53.710 kb on - strandat 53.859 kb on + strandat 53.955 kb on + strand, within GFF4475at 53.955 kb on + strand, within GFF4475at 53.955 kb on + strand, within GFF4475at 53.955 kb on + strand, within GFF4475at 53.956 kb on - strand, within GFF4475at 53.956 kb on - strand, within GFF4475at 53.956 kb on - strand, within GFF4475at 54.076 kb on - strand, within GFF4475at 54.120 kb on + strand, within GFF4475at 54.121 kb on - strand, within GFF4475at 54.198 kb on + strand, within GFF4475at 54.231 kb on + strand, within GFF4475at 54.232 kb on - strand, within GFF4475at 54.454 kb on + strandat 54.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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51,507 + GFF4473 0.12 +1.1
51,747 + GFF4473 0.37 -0.1
51,747 + GFF4473 0.37 -0.2
51,748 - GFF4473 0.37 -0.6
51,748 - GFF4473 0.37 +0.1
51,877 - GFF4473 0.51 +0.6
51,877 - GFF4473 0.51 -0.4
51,942 + GFF4473 0.58 -0.8
51,942 + GFF4473 0.58 +0.3
51,942 + GFF4473 0.58 +0.3
51,943 - GFF4473 0.58 +1.0
51,969 + GFF4473 0.61 +0.5
52,193 + GFF4473 0.85 +0.4
52,194 - GFF4473 0.85 +0.7
52,333 - -0.5
52,347 - +0.2
52,757 + GFF4474 0.31 -0.3
52,757 + GFF4474 0.31 -0.3
52,757 + GFF4474 0.31 +1.4
52,757 + GFF4474 0.31 -1.0
52,757 + GFF4474 0.31 -1.3
52,758 - GFF4474 0.31 -0.1
52,758 - GFF4474 0.31 -0.8
52,758 - GFF4474 0.31 +0.3
52,758 - GFF4474 0.31 +0.3
52,941 - GFF4474 0.48 -0.2
52,981 - GFF4474 0.51 -0.1
52,981 - GFF4474 0.51 +1.0
53,051 + GFF4474 0.57 -0.1
53,051 + GFF4474 0.57 -0.4
53,052 - GFF4474 0.57 +1.0
53,159 + GFF4474 0.67 -0.5
53,168 + GFF4474 0.68 +0.5
53,169 - GFF4474 0.68 +0.4
53,169 - GFF4474 0.68 +0.4
53,297 + GFF4474 0.79 -0.1
53,297 + GFF4474 0.79 -0.7
53,298 - GFF4474 0.79 +0.4
53,298 - GFF4474 0.79 -0.3
53,298 - GFF4474 0.79 +0.5
53,373 - GFF4474 0.86 +0.3
53,373 - GFF4474 0.86 +0.5
53,373 - GFF4474 0.86 +0.9
53,710 - +0.5
53,859 + +0.1
53,955 + GFF4475 0.22 -0.2
53,955 + GFF4475 0.22 -0.2
53,955 + GFF4475 0.22 -2.2
53,955 + GFF4475 0.22 +0.6
53,956 - GFF4475 0.22 -0.1
53,956 - GFF4475 0.22 +0.1
53,956 - GFF4475 0.22 +0.4
54,076 - GFF4475 0.51 -0.2
54,120 + GFF4475 0.62 -0.1
54,121 - GFF4475 0.62 -0.3
54,198 + GFF4475 0.81 +0.3
54,231 + GFF4475 0.89 +0.1
54,232 - GFF4475 0.89 +0.2
54,454 + +0.1
54,455 - -0.0

Or see this region's nucleotide sequence