Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4448 and GFF4449 are separated by 136 nucleotides GFF4449 and GFF4450 are separated by 70 nucleotides GFF4450 and GFF4451 are separated by 106 nucleotides
GFF4448 - Organic hydroperoxide resistance protein OhrB, at 24,366 to 24,794
GFF4448
GFF4449 - Organic hydroperoxide resistance transcriptional regulator, at 24,931 to 25,440
GFF4449
GFF4450 - hypothetical protein, at 25,511 to 26,212
GFF4450
GFF4451 - Sensor histidine kinase RcsC, at 26,319 to 29,822
GFF4451
Position (kb) 25
26
27 Strain fitness (log2 ratio) -1
0
1
2 at 24.775 kb on + strand at 24.775 kb on + strand at 24.775 kb on + strand at 25.046 kb on - strand, within GFF4449 at 25.046 kb on - strand, within GFF4449 at 25.076 kb on - strand, within GFF4449 at 25.108 kb on + strand, within GFF4449 at 25.913 kb on + strand, within GFF4450 at 25.913 kb on + strand, within GFF4450 at 25.914 kb on - strand, within GFF4450 at 25.914 kb on - strand, within GFF4450 at 26.103 kb on - strand, within GFF4450 at 26.115 kb on - strand, within GFF4450 at 26.115 kb on - strand, within GFF4450 at 26.123 kb on + strand, within GFF4450 at 26.124 kb on - strand, within GFF4450 at 26.125 kb on + strand, within GFF4450 at 26.125 kb on + strand, within GFF4450 at 26.246 kb on + strand at 26.247 kb on - strand at 26.247 kb on - strand at 26.318 kb on + strand at 26.318 kb on + strand at 26.319 kb on - strand at 26.359 kb on - strand at 26.359 kb on - strand at 26.442 kb on + strand at 26.442 kb on + strand at 26.442 kb on + strand at 26.443 kb on - strand at 26.463 kb on + strand at 26.464 kb on - strand at 26.464 kb on - strand at 26.464 kb on - strand at 26.535 kb on + strand at 26.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 24,775 + +0.7 24,775 + -0.1 24,775 + +1.4 25,046 - GFF4449 0.23 +0.8 25,046 - GFF4449 0.23 -0.2 25,076 - GFF4449 0.28 +1.1 25,108 + GFF4449 0.35 -0.3 25,913 + GFF4450 0.57 -1.7 25,913 + GFF4450 0.57 -0.1 25,914 - GFF4450 0.57 +0.6 25,914 - GFF4450 0.57 +0.0 26,103 - GFF4450 0.84 -1.3 26,115 - GFF4450 0.86 +0.7 26,115 - GFF4450 0.86 -1.7 26,123 + GFF4450 0.87 -0.8 26,124 - GFF4450 0.87 +0.0 26,125 + GFF4450 0.87 -1.0 26,125 + GFF4450 0.87 +0.3 26,246 + -0.2 26,247 - -0.8 26,247 - +0.3 26,318 + +0.1 26,318 + -0.3 26,319 - -0.1 26,359 - +0.1 26,359 - -0.3 26,442 + +0.1 26,442 + -0.4 26,442 + +0.3 26,443 - +2.6 26,463 + +0.8 26,464 - -0.4 26,464 - +0.7 26,464 - -0.2 26,535 + +0.5 26,535 + +0.4
Or see this region's nucleotide sequence