Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4434 and GFF4435 overlap by 1 nucleotides GFF4435 and GFF4436 overlap by 8 nucleotides GFF4436 and GFF4437 overlap by 4 nucleotides GFF4437 and GFF4438 are separated by 8 nucleotides
GFF4434 - Urease accessory protein UreG, at 12,267 to 13,262
GFF4434
GFF4435 - Hydrogenase maturation factor HybF, at 13,262 to 13,603
GFF4435
GFF4436 - hypothetical protein, at 13,596 to 14,570
GFF4436
GFF4437 - hypothetical protein, at 14,567 to 15,463
GFF4437
GFF4438 - hypothetical protein, at 15,472 to 16,326
GFF4438
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1 at 12.940 kb on + strand, within GFF4434 at 12.940 kb on + strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 12.941 kb on - strand, within GFF4434 at 13.034 kb on - strand, within GFF4434 at 13.034 kb on - strand, within GFF4434 at 13.100 kb on + strand, within GFF4434 at 13.136 kb on + strand, within GFF4434 at 13.137 kb on - strand, within GFF4434 at 13.137 kb on - strand, within GFF4434 at 13.287 kb on + strand at 13.288 kb on - strand at 13.603 kb on + strand at 13.603 kb on + strand at 13.603 kb on + strand at 13.603 kb on + strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.604 kb on - strand at 13.772 kb on - strand, within GFF4436 at 14.453 kb on + strand, within GFF4436 at 14.889 kb on + strand, within GFF4437 at 14.889 kb on + strand, within GFF4437 at 14.889 kb on + strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.890 kb on - strand, within GFF4437 at 14.929 kb on - strand, within GFF4437 at 14.929 kb on - strand, within GFF4437 at 15.094 kb on + strand, within GFF4437 at 15.095 kb on - strand, within GFF4437 at 15.366 kb on + strand, within GFF4437 at 15.366 kb on + strand, within GFF4437 at 15.432 kb on + strand at 15.433 kb on - strand at 15.433 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 12,940 + GFF4434 0.68 -0.5 12,940 + GFF4434 0.68 -0.2 12,941 - GFF4434 0.68 -0.9 12,941 - GFF4434 0.68 -1.4 12,941 - GFF4434 0.68 +0.8 13,034 - GFF4434 0.77 +0.4 13,034 - GFF4434 0.77 -0.2 13,100 + GFF4434 0.84 -0.2 13,136 + GFF4434 0.87 -1.4 13,137 - GFF4434 0.87 -1.1 13,137 - GFF4434 0.87 +0.8 13,287 + -0.4 13,288 - +0.1 13,603 + +0.3 13,603 + +0.1 13,603 + +0.5 13,603 + +0.8 13,604 - -0.3 13,604 - -0.2 13,604 - -0.9 13,604 - +0.4 13,604 - -0.7 13,604 - +0.4 13,772 - GFF4436 0.18 -0.5 14,453 + GFF4436 0.88 -0.5 14,889 + GFF4437 0.36 +0.1 14,889 + GFF4437 0.36 -0.1 14,889 + GFF4437 0.36 -0.1 14,890 - GFF4437 0.36 +0.8 14,890 - GFF4437 0.36 +0.3 14,890 - GFF4437 0.36 +0.8 14,890 - GFF4437 0.36 +0.3 14,890 - GFF4437 0.36 -0.1 14,929 - GFF4437 0.40 +0.6 14,929 - GFF4437 0.40 -0.2 15,094 + GFF4437 0.59 -0.7 15,095 - GFF4437 0.59 -0.6 15,366 + GFF4437 0.89 +0.4 15,366 + GFF4437 0.89 +0.8 15,432 + -0.5 15,433 - -0.3 15,433 - +0.3
Or see this region's nucleotide sequence