Strain Fitness in Xanthobacter sp. DMC5 around GFF4399

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4398 and GFF4399 are separated by 161 nucleotidesGFF4399 and GFF4400 are separated by 121 nucleotidesGFF4400 and GFF4401 are separated by 24 nucleotides GFF4398 - Succinyl-diaminopimelate desuccinylase, at 201,478 to 202,659 GFF4398 GFF4399 - hypothetical protein, at 202,821 to 205,457 GFF4399 GFF4400 - hypothetical protein, at 205,579 to 206,118 GFF4400 GFF4401 - hypothetical protein, at 206,143 to 207,087 GFF4401 Position (kb) 202 203 204 205 206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 202.695 kb on - strandat 202.757 kb on + strandat 202.758 kb on - strandat 202.821 kb on - strandat 203.107 kb on - strand, within GFF4399at 203.578 kb on - strand, within GFF4399at 203.772 kb on + strand, within GFF4399at 204.007 kb on - strand, within GFF4399at 204.009 kb on + strand, within GFF4399at 204.010 kb on - strand, within GFF4399at 204.250 kb on - strand, within GFF4399at 204.309 kb on + strand, within GFF4399at 204.309 kb on + strand, within GFF4399at 204.309 kb on + strand, within GFF4399at 204.310 kb on - strand, within GFF4399at 204.375 kb on + strand, within GFF4399at 204.376 kb on - strand, within GFF4399at 204.376 kb on - strand, within GFF4399at 204.384 kb on + strand, within GFF4399at 204.384 kb on + strand, within GFF4399at 204.384 kb on + strand, within GFF4399at 204.385 kb on - strand, within GFF4399at 204.385 kb on - strand, within GFF4399at 204.385 kb on - strand, within GFF4399at 204.385 kb on - strand, within GFF4399at 204.658 kb on - strand, within GFF4399at 204.658 kb on - strand, within GFF4399at 204.658 kb on - strand, within GFF4399at 204.746 kb on - strand, within GFF4399at 204.746 kb on - strand, within GFF4399at 204.786 kb on + strand, within GFF4399at 204.787 kb on - strand, within GFF4399at 204.787 kb on - strand, within GFF4399at 204.787 kb on - strand, within GFF4399at 204.787 kb on - strand, within GFF4399at 204.993 kb on + strand, within GFF4399at 204.994 kb on - strand, within GFF4399at 205.146 kb on + strand, within GFF4399at 205.146 kb on + strand, within GFF4399at 205.146 kb on + strand, within GFF4399at 205.147 kb on - strand, within GFF4399at 205.147 kb on - strand, within GFF4399at 205.147 kb on - strand, within GFF4399at 205.147 kb on - strand, within GFF4399at 205.239 kb on - strandat 205.302 kb on + strandat 205.303 kb on - strandat 205.303 kb on - strandat 205.303 kb on - strandat 205.303 kb on - strandat 205.455 kb on + strandat 205.456 kb on - strandat 205.456 kb on - strandat 205.456 kb on - strandat 205.690 kb on + strand, within GFF4400at 205.691 kb on - strand, within GFF4400at 205.691 kb on - strand, within GFF4400at 205.713 kb on + strand, within GFF4400at 205.713 kb on + strand, within GFF4400at 205.714 kb on - strand, within GFF4400at 205.945 kb on + strand, within GFF4400at 205.946 kb on - strand, within GFF4400at 206.065 kb on + strandat 206.065 kb on + strandat 206.065 kb on + strandat 206.065 kb on + strandat 206.066 kb on - strandat 206.066 kb on - strandat 206.066 kb on - strandat 206.066 kb on - strandat 206.074 kb on + strandat 206.075 kb on - strandat 206.075 kb on - strandat 206.174 kb on + strandat 206.382 kb on + strand, within GFF4401at 206.382 kb on + strand, within GFF4401at 206.382 kb on + strand, within GFF4401at 206.382 kb on + strand, within GFF4401at 206.383 kb on - strand, within GFF4401at 206.384 kb on + strand, within GFF4401at 206.385 kb on - strand, within GFF4401at 206.410 kb on - strand, within GFF4401at 206.426 kb on + strand, within GFF4401at 206.426 kb on + strand, within GFF4401at 206.435 kb on + strand, within GFF4401

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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202,695 - -0.6
202,757 + +0.3
202,758 - -0.7
202,821 - -0.2
203,107 - GFF4399 0.11 -0.6
203,578 - GFF4399 0.29 +0.2
203,772 + GFF4399 0.36 -1.3
204,007 - GFF4399 0.45 -4.0
204,009 + GFF4399 0.45 -2.0
204,010 - GFF4399 0.45 -1.1
204,250 - GFF4399 0.54 -2.2
204,309 + GFF4399 0.56 -0.7
204,309 + GFF4399 0.56 -0.7
204,309 + GFF4399 0.56 +0.2
204,310 - GFF4399 0.56 -0.1
204,375 + GFF4399 0.59 -1.4
204,376 - GFF4399 0.59 -0.4
204,376 - GFF4399 0.59 -0.0
204,384 + GFF4399 0.59 -1.0
204,384 + GFF4399 0.59 -1.4
204,384 + GFF4399 0.59 -2.0
204,385 - GFF4399 0.59 -1.6
204,385 - GFF4399 0.59 -2.2
204,385 - GFF4399 0.59 -1.2
204,385 - GFF4399 0.59 -0.9
204,658 - GFF4399 0.70 -0.6
204,658 - GFF4399 0.70 -1.0
204,658 - GFF4399 0.70 -0.7
204,746 - GFF4399 0.73 -1.1
204,746 - GFF4399 0.73 -1.3
204,786 + GFF4399 0.75 -0.6
204,787 - GFF4399 0.75 -0.7
204,787 - GFF4399 0.75 -0.2
204,787 - GFF4399 0.75 -1.4
204,787 - GFF4399 0.75 -1.1
204,993 + GFF4399 0.82 +0.2
204,994 - GFF4399 0.82 -1.0
205,146 + GFF4399 0.88 +0.1
205,146 + GFF4399 0.88 -1.1
205,146 + GFF4399 0.88 -1.6
205,147 - GFF4399 0.88 -0.3
205,147 - GFF4399 0.88 -3.0
205,147 - GFF4399 0.88 -1.0
205,147 - GFF4399 0.88 -1.7
205,239 - -1.2
205,302 + +0.0
205,303 - -0.6
205,303 - -1.6
205,303 - -0.6
205,303 - -0.7
205,455 + +0.9
205,456 - -0.2
205,456 - +0.8
205,456 - -1.5
205,690 + GFF4400 0.21 -0.1
205,691 - GFF4400 0.21 +0.4
205,691 - GFF4400 0.21 -0.6
205,713 + GFF4400 0.25 +0.6
205,713 + GFF4400 0.25 -0.0
205,714 - GFF4400 0.25 -0.3
205,945 + GFF4400 0.68 +0.6
205,946 - GFF4400 0.68 -0.4
206,065 + +0.6
206,065 + +0.2
206,065 + +1.0
206,065 + -0.7
206,066 - -0.1
206,066 - +0.2
206,066 - -0.2
206,066 - +0.5
206,074 + +0.3
206,075 - +1.0
206,075 - +0.6
206,174 + -0.6
206,382 + GFF4401 0.25 -0.1
206,382 + GFF4401 0.25 +0.6
206,382 + GFF4401 0.25 -0.3
206,382 + GFF4401 0.25 -0.6
206,383 - GFF4401 0.25 +0.8
206,384 + GFF4401 0.26 +0.8
206,385 - GFF4401 0.26 -0.1
206,410 - GFF4401 0.28 -0.3
206,426 + GFF4401 0.30 -0.0
206,426 + GFF4401 0.30 -0.0
206,435 + GFF4401 0.31 +1.2

Or see this region's nucleotide sequence