Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4383 and GFF4384 are separated by 296 nucleotides GFF4384 and GFF4385 are separated by 327 nucleotides
GFF4383 - L-threonine 3-dehydrogenase, at 172,752 to 181,994
GFF4383
GFF4384 - hypothetical protein, at 182,291 to 183,769
GFF4384
GFF4385 - hypothetical protein, at 184,097 to 185,233
GFF4385
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 181.526 kb on - strand at 181.741 kb on + strand at 181.777 kb on + strand at 181.778 kb on - strand at 182.042 kb on - strand at 182.086 kb on - strand at 182.169 kb on + strand at 182.303 kb on + strand at 182.490 kb on + strand, within GFF4384 at 182.843 kb on - strand, within GFF4384 at 182.862 kb on + strand, within GFF4384 at 182.868 kb on + strand, within GFF4384 at 183.045 kb on + strand, within GFF4384 at 183.046 kb on - strand, within GFF4384 at 183.336 kb on + strand, within GFF4384 at 183.337 kb on - strand, within GFF4384 at 183.492 kb on + strand, within GFF4384 at 183.492 kb on + strand, within GFF4384 at 183.839 kb on + strand at 183.986 kb on + strand at 183.987 kb on - strand at 184.071 kb on - strand at 184.115 kb on + strand at 184.116 kb on - strand at 184.116 kb on - strand at 184.116 kb on - strand at 184.116 kb on - strand at 184.139 kb on + strand at 184.289 kb on + strand, within GFF4385 at 184.289 kb on + strand, within GFF4385 at 184.290 kb on - strand, within GFF4385 at 184.305 kb on - strand, within GFF4385 at 184.337 kb on + strand, within GFF4385 at 184.337 kb on + strand, within GFF4385 at 184.337 kb on + strand, within GFF4385 at 184.338 kb on - strand, within GFF4385 at 184.338 kb on - strand, within GFF4385 at 184.338 kb on - strand, within GFF4385 at 184.338 kb on - strand, within GFF4385 at 184.495 kb on + strand, within GFF4385 at 184.495 kb on + strand, within GFF4385 at 184.496 kb on - strand, within GFF4385 at 184.496 kb on - strand, within GFF4385 at 184.595 kb on + strand, within GFF4385
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 181,526 - -0.7 181,741 + +1.2 181,777 + +0.3 181,778 - -0.3 182,042 - +0.7 182,086 - -0.3 182,169 + +0.3 182,303 + -1.2 182,490 + GFF4384 0.13 -2.3 182,843 - GFF4384 0.37 -0.8 182,862 + GFF4384 0.39 -1.5 182,868 + GFF4384 0.39 -0.4 183,045 + GFF4384 0.51 -0.1 183,046 - GFF4384 0.51 -0.2 183,336 + GFF4384 0.71 -0.1 183,337 - GFF4384 0.71 -1.2 183,492 + GFF4384 0.81 -0.8 183,492 + GFF4384 0.81 -2.8 183,839 + -0.5 183,986 + +0.4 183,987 - +1.1 184,071 - +0.5 184,115 + +0.2 184,116 - +0.7 184,116 - +0.7 184,116 - +0.3 184,116 - +0.7 184,139 + -0.8 184,289 + GFF4385 0.17 -0.3 184,289 + GFF4385 0.17 +0.9 184,290 - GFF4385 0.17 -0.2 184,305 - GFF4385 0.18 +1.1 184,337 + GFF4385 0.21 +1.2 184,337 + GFF4385 0.21 +0.0 184,337 + GFF4385 0.21 +0.2 184,338 - GFF4385 0.21 -0.3 184,338 - GFF4385 0.21 +1.1 184,338 - GFF4385 0.21 +0.1 184,338 - GFF4385 0.21 -0.7 184,495 + GFF4385 0.35 -0.2 184,495 + GFF4385 0.35 +0.2 184,496 - GFF4385 0.35 +1.2 184,496 - GFF4385 0.35 +0.2 184,595 + GFF4385 0.44 -0.2
Or see this region's nucleotide sequence