Strain Fitness in Xanthobacter sp. DMC5 around GFF4352

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4351 and GFF4352 overlap by 4 nucleotidesGFF4352 and GFF4353 are separated by 124 nucleotides GFF4351 - Multidrug resistance protein MdtE, at 132,975 to 134,108 GFF4351 GFF4352 - Multidrug resistance protein MdtC, at 134,105 to 137,194 GFF4352 GFF4353 - hypothetical protein, at 137,319 to 138,344 GFF4353 Position (kb) 134 135 136 137 138Strain fitness (log2 ratio) -2 -1 0 1at 133.201 kb on - strand, within GFF4351at 133.201 kb on - strand, within GFF4351at 133.374 kb on + strand, within GFF4351at 133.374 kb on + strand, within GFF4351at 133.426 kb on - strand, within GFF4351at 133.426 kb on - strand, within GFF4351at 133.772 kb on + strand, within GFF4351at 133.772 kb on + strand, within GFF4351at 133.772 kb on + strand, within GFF4351at 133.772 kb on + strand, within GFF4351at 133.773 kb on - strand, within GFF4351at 134.162 kb on + strandat 134.162 kb on + strandat 134.163 kb on - strandat 134.163 kb on - strandat 134.163 kb on - strandat 134.163 kb on - strandat 134.163 kb on - strandat 134.363 kb on + strandat 134.363 kb on + strandat 134.364 kb on - strandat 134.441 kb on + strand, within GFF4352at 134.442 kb on - strand, within GFF4352at 134.543 kb on + strand, within GFF4352at 134.588 kb on + strand, within GFF4352at 134.588 kb on + strand, within GFF4352at 134.588 kb on + strand, within GFF4352at 134.589 kb on - strand, within GFF4352at 134.589 kb on - strand, within GFF4352at 134.589 kb on - strand, within GFF4352at 135.150 kb on + strand, within GFF4352at 135.150 kb on + strand, within GFF4352at 135.150 kb on + strand, within GFF4352at 135.151 kb on - strand, within GFF4352at 135.151 kb on - strand, within GFF4352at 135.256 kb on + strand, within GFF4352at 135.390 kb on - strand, within GFF4352at 135.404 kb on + strand, within GFF4352at 135.488 kb on + strand, within GFF4352at 135.489 kb on - strand, within GFF4352at 135.489 kb on - strand, within GFF4352at 135.648 kb on - strand, within GFF4352at 135.648 kb on - strand, within GFF4352at 135.648 kb on - strand, within GFF4352at 135.648 kb on - strand, within GFF4352at 135.648 kb on - strand, within GFF4352at 135.648 kb on - strand, within GFF4352at 135.821 kb on + strand, within GFF4352at 135.896 kb on + strand, within GFF4352at 135.896 kb on + strand, within GFF4352at 135.896 kb on + strand, within GFF4352at 135.896 kb on + strand, within GFF4352at 135.896 kb on + strand, within GFF4352at 135.896 kb on + strand, within GFF4352at 135.897 kb on - strand, within GFF4352at 135.897 kb on - strand, within GFF4352at 135.897 kb on - strand, within GFF4352at 135.923 kb on + strand, within GFF4352at 135.924 kb on - strand, within GFF4352at 136.109 kb on + strand, within GFF4352at 136.206 kb on - strand, within GFF4352at 136.352 kb on + strand, within GFF4352at 136.353 kb on - strand, within GFF4352at 136.353 kb on - strand, within GFF4352at 136.353 kb on - strand, within GFF4352at 136.353 kb on - strand, within GFF4352at 136.479 kb on - strand, within GFF4352at 136.629 kb on - strand, within GFF4352at 137.123 kb on + strandat 137.123 kb on + strandat 137.124 kb on - strandat 137.124 kb on - strandat 137.124 kb on - strandat 137.335 kb on + strandat 137.532 kb on + strand, within GFF4353at 137.676 kb on + strand, within GFF4353at 137.676 kb on + strand, within GFF4353at 137.676 kb on + strand, within GFF4353at 137.677 kb on - strand, within GFF4353at 137.910 kb on + strand, within GFF4353at 137.911 kb on - strand, within GFF4353at 138.078 kb on + strand, within GFF4353at 138.078 kb on + strand, within GFF4353at 138.078 kb on + strand, within GFF4353at 138.078 kb on + strand, within GFF4353at 138.078 kb on + strand, within GFF4353at 138.078 kb on + strand, within GFF4353at 138.078 kb on + strand, within GFF4353at 138.079 kb on - strand, within GFF4353at 138.079 kb on - strand, within GFF4353at 138.079 kb on - strand, within GFF4353at 138.079 kb on - strand, within GFF4353at 138.079 kb on - strand, within GFF4353

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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133,201 - GFF4351 0.20 -0.5
133,201 - GFF4351 0.20 +0.4
133,374 + GFF4351 0.35 -0.2
133,374 + GFF4351 0.35 +0.3
133,426 - GFF4351 0.40 -0.3
133,426 - GFF4351 0.40 +0.2
133,772 + GFF4351 0.70 +1.2
133,772 + GFF4351 0.70 +0.5
133,772 + GFF4351 0.70 -0.7
133,772 + GFF4351 0.70 -0.6
133,773 - GFF4351 0.70 -0.4
134,162 + -0.6
134,162 + -0.6
134,163 - -1.0
134,163 - +0.1
134,163 - -0.1
134,163 - +0.0
134,163 - +0.3
134,363 + +0.1
134,363 + +0.6
134,364 - -0.3
134,441 + GFF4352 0.11 -0.4
134,442 - GFF4352 0.11 -0.1
134,543 + GFF4352 0.14 +0.5
134,588 + GFF4352 0.16 -0.4
134,588 + GFF4352 0.16 -0.5
134,588 + GFF4352 0.16 -0.1
134,589 - GFF4352 0.16 +0.2
134,589 - GFF4352 0.16 +0.4
134,589 - GFF4352 0.16 +0.2
135,150 + GFF4352 0.34 -0.1
135,150 + GFF4352 0.34 -0.4
135,150 + GFF4352 0.34 +1.5
135,151 - GFF4352 0.34 -0.5
135,151 - GFF4352 0.34 +0.1
135,256 + GFF4352 0.37 +0.3
135,390 - GFF4352 0.42 +0.1
135,404 + GFF4352 0.42 -0.1
135,488 + GFF4352 0.45 -0.1
135,489 - GFF4352 0.45 +0.1
135,489 - GFF4352 0.45 +0.1
135,648 - GFF4352 0.50 +0.9
135,648 - GFF4352 0.50 +1.7
135,648 - GFF4352 0.50 +0.7
135,648 - GFF4352 0.50 -0.8
135,648 - GFF4352 0.50 +0.4
135,648 - GFF4352 0.50 -0.3
135,821 + GFF4352 0.56 -0.3
135,896 + GFF4352 0.58 -0.4
135,896 + GFF4352 0.58 -1.1
135,896 + GFF4352 0.58 -1.8
135,896 + GFF4352 0.58 +1.0
135,896 + GFF4352 0.58 -0.6
135,896 + GFF4352 0.58 -0.4
135,897 - GFF4352 0.58 -0.5
135,897 - GFF4352 0.58 +0.5
135,897 - GFF4352 0.58 +0.5
135,923 + GFF4352 0.59 +0.5
135,924 - GFF4352 0.59 -0.5
136,109 + GFF4352 0.65 -0.4
136,206 - GFF4352 0.68 +0.5
136,352 + GFF4352 0.73 -0.1
136,353 - GFF4352 0.73 +0.5
136,353 - GFF4352 0.73 +0.2
136,353 - GFF4352 0.73 +0.6
136,353 - GFF4352 0.73 +0.3
136,479 - GFF4352 0.77 -0.5
136,629 - GFF4352 0.82 -0.6
137,123 + +0.6
137,123 + -0.7
137,124 - +0.2
137,124 - -0.1
137,124 - -0.0
137,335 + -0.2
137,532 + GFF4353 0.21 -0.2
137,676 + GFF4353 0.35 -0.4
137,676 + GFF4353 0.35 -0.3
137,676 + GFF4353 0.35 +0.8
137,677 - GFF4353 0.35 -0.4
137,910 + GFF4353 0.58 -0.2
137,911 - GFF4353 0.58 -0.5
138,078 + GFF4353 0.74 -0.2
138,078 + GFF4353 0.74 +0.7
138,078 + GFF4353 0.74 +0.3
138,078 + GFF4353 0.74 -0.5
138,078 + GFF4353 0.74 -0.8
138,078 + GFF4353 0.74 -0.3
138,078 + GFF4353 0.74 -1.2
138,079 - GFF4353 0.74 -0.6
138,079 - GFF4353 0.74 +0.4
138,079 - GFF4353 0.74 -0.2
138,079 - GFF4353 0.74 +0.3
138,079 - GFF4353 0.74 +0.3

Or see this region's nucleotide sequence