Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4337 and GFF4338 are separated by 29 nucleotides GFF4338 and GFF4339 are separated by 20 nucleotides GFF4339 and GFF4340 are separated by 162 nucleotides GFF4340 and GFF4341 are separated by 262 nucleotides
GFF4337 - hypothetical protein, at 120,779 to 121,480
GFF4337
GFF4338 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 121,510 to 122,256
GFF4338
GFF4339 - D-erythronate dehydrogenase, at 122,277 to 123,254
GFF4339
GFF4340 - hypothetical protein, at 123,417 to 123,875
GFF4340
GFF4341 - hypothetical protein, at 124,138 to 124,848
GFF4341
Position (kb) 122
123
124 Strain fitness (log2 ratio) -1
0
1 at 121.479 kb on - strand at 121.479 kb on - strand at 121.943 kb on - strand, within GFF4338 at 122.185 kb on + strand at 122.186 kb on - strand at 122.616 kb on + strand, within GFF4339 at 122.617 kb on - strand, within GFF4339 at 122.617 kb on - strand, within GFF4339 at 122.618 kb on + strand, within GFF4339 at 122.619 kb on - strand, within GFF4339 at 122.619 kb on - strand, within GFF4339 at 122.691 kb on + strand, within GFF4339 at 122.692 kb on - strand, within GFF4339 at 122.715 kb on + strand, within GFF4339 at 122.716 kb on - strand, within GFF4339 at 122.735 kb on - strand, within GFF4339 at 122.757 kb on + strand, within GFF4339 at 122.757 kb on + strand, within GFF4339 at 123.418 kb on + strand at 123.798 kb on + strand, within GFF4340 at 123.798 kb on + strand, within GFF4340 at 123.798 kb on + strand, within GFF4340 at 123.799 kb on - strand, within GFF4340 at 123.891 kb on + strand at 124.026 kb on + strand at 124.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 121,479 - +0.1 121,479 - +0.4 121,943 - GFF4338 0.58 +0.3 122,185 + +0.4 122,186 - +0.2 122,616 + GFF4339 0.35 -0.9 122,617 - GFF4339 0.35 -0.0 122,617 - GFF4339 0.35 -1.0 122,618 + GFF4339 0.35 +0.4 122,619 - GFF4339 0.35 +0.5 122,619 - GFF4339 0.35 +0.1 122,691 + GFF4339 0.42 +0.6 122,692 - GFF4339 0.42 -0.0 122,715 + GFF4339 0.45 -0.2 122,716 - GFF4339 0.45 +0.1 122,735 - GFF4339 0.47 +1.2 122,757 + GFF4339 0.49 +0.6 122,757 + GFF4339 0.49 +0.7 123,418 + -0.0 123,798 + GFF4340 0.83 +0.1 123,798 + GFF4340 0.83 -0.5 123,798 + GFF4340 0.83 -0.4 123,799 - GFF4340 0.83 -0.4 123,891 + -0.4 124,026 + -0.4 124,026 + +0.0
Or see this region's nucleotide sequence