Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4333 and GFF4334 overlap by 4 nucleotides GFF4334 and GFF4335 are separated by 206 nucleotides GFF4335 and GFF4336 are separated by 99 nucleotides GFF4336 and GFF4337 overlap by 1 nucleotides
GFF4333 - Energy-coupling factor transporter transmembrane protein BioN, at 116,393 to 117,025
GFF4333
GFF4334 - Biotin transport ATP-binding protein BioM, at 117,022 to 117,792
GFF4334
GFF4335 - L-arabonate dehydratase, at 117,999 to 119,849
GFF4335
GFF4336 - putative protein, at 119,949 to 120,779
GFF4336
GFF4337 - hypothetical protein, at 120,779 to 121,480
GFF4337
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -2
-1
0
1 at 117.013 kb on - strand at 117.912 kb on - strand at 117.935 kb on - strand at 118.131 kb on + strand at 118.371 kb on + strand, within GFF4335 at 118.602 kb on + strand, within GFF4335 at 118.744 kb on - strand, within GFF4335 at 118.853 kb on + strand, within GFF4335 at 119.007 kb on + strand, within GFF4335 at 119.008 kb on - strand, within GFF4335 at 119.346 kb on + strand, within GFF4335 at 119.346 kb on + strand, within GFF4335 at 119.347 kb on - strand, within GFF4335 at 119.347 kb on - strand, within GFF4335 at 119.347 kb on - strand, within GFF4335 at 119.347 kb on - strand, within GFF4335 at 119.388 kb on + strand, within GFF4335 at 119.388 kb on + strand, within GFF4335 at 119.388 kb on + strand, within GFF4335 at 119.388 kb on + strand, within GFF4335 at 119.900 kb on + strand at 119.901 kb on - strand at 119.901 kb on - strand at 119.901 kb on - strand at 120.046 kb on - strand, within GFF4336 at 120.093 kb on + strand, within GFF4336 at 120.093 kb on + strand, within GFF4336 at 120.093 kb on + strand, within GFF4336 at 120.210 kb on + strand, within GFF4336 at 120.211 kb on - strand, within GFF4336 at 120.318 kb on + strand, within GFF4336 at 120.319 kb on - strand, within GFF4336 at 120.493 kb on - strand, within GFF4336
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 117,013 - -0.9 117,912 - +0.4 117,935 - -0.3 118,131 + +0.0 118,371 + GFF4335 0.20 -0.7 118,602 + GFF4335 0.33 -0.1 118,744 - GFF4335 0.40 -1.0 118,853 + GFF4335 0.46 -1.0 119,007 + GFF4335 0.54 -0.6 119,008 - GFF4335 0.55 -0.0 119,346 + GFF4335 0.73 -1.9 119,346 + GFF4335 0.73 +0.5 119,347 - GFF4335 0.73 +0.1 119,347 - GFF4335 0.73 -0.8 119,347 - GFF4335 0.73 -2.2 119,347 - GFF4335 0.73 -1.1 119,388 + GFF4335 0.75 -0.1 119,388 + GFF4335 0.75 +0.8 119,388 + GFF4335 0.75 -0.6 119,388 + GFF4335 0.75 -0.9 119,900 + +0.0 119,901 - +0.2 119,901 - -0.7 119,901 - -0.2 120,046 - GFF4336 0.12 -0.6 120,093 + GFF4336 0.17 +0.0 120,093 + GFF4336 0.17 +0.4 120,093 + GFF4336 0.17 +0.0 120,210 + GFF4336 0.31 +1.0 120,211 - GFF4336 0.32 +0.7 120,318 + GFF4336 0.44 -0.6 120,319 - GFF4336 0.45 +0.2 120,493 - GFF4336 0.65 -0.3
Or see this region's nucleotide sequence